Variant report
| Variant | rs7309287 |
|---|---|
| Chromosome Location | chr12:44846626-44846627 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10880632 | 0.80[AMR][1000 genomes] |
| rs11182500 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11610751 | 1.00[EUR][1000 genomes] |
| rs11611513 | 0.96[EUR][1000 genomes] |
| rs11612006 | 1.00[EUR][1000 genomes] |
| rs11613516 | 0.96[EUR][1000 genomes] |
| rs11837624 | 1.00[ASN][1000 genomes] |
| rs1353144 | 0.96[EUR][1000 genomes] |
| rs1493758 | 1.00[ASN][1000 genomes] |
| rs17094591 | 0.94[EUR][1000 genomes] |
| rs17094614 | 0.96[EUR][1000 genomes] |
| rs17094655 | 1.00[EUR][1000 genomes] |
| rs17094666 | 1.00[ASN][1000 genomes] |
| rs1817884 | 1.00[EUR][1000 genomes] |
| rs1873977 | 0.96[EUR][1000 genomes] |
| rs1873979 | 0.96[EUR][1000 genomes] |
| rs55636254 | 0.94[EUR][1000 genomes] |
| rs55726837 | 1.00[ASN][1000 genomes] |
| rs56367710 | 0.96[EUR][1000 genomes] |
| rs57180808 | 1.00[EUR][1000 genomes] |
| rs7304503 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73092522 | 0.96[EUR][1000 genomes] |
| rs73092524 | 0.96[EUR][1000 genomes] |
| rs73094350 | 0.96[EUR][1000 genomes] |
| rs73094362 | 0.94[EUR][1000 genomes] |
| rs73094373 | 1.00[EUR][1000 genomes] |
| rs73276296 | 1.00[ASN][1000 genomes] |
| rs73276299 | 1.00[ASN][1000 genomes] |
| rs765530 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs869629 | 0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049818 | chr12:44486312-45133783 | Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:44840600-44848200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
