Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:44816718..44819049-chr12:44821321..44822850,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11182500	0.92[EUR][1000 genomes]
rs11610751	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11611513	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11612006	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11613516	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1353144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17094591	0.98[EUR][1000 genomes]
rs17094614	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17094655	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1817884	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1873977	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55636254	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56367710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57180808	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7304503	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73092522	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092524	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7309287	0.96[EUR][1000 genomes]
rs73094350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73094362	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73094373	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs765530	0.96[EUR][1000 genomes]
rs869629	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44813400-44822400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr12:44816800-44821800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr12:44816800-44821800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:44816800-44822000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr12:44817000-44822400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr12:44821600-44823800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr12:44821600-44824600	Enhancers	iPS-20b Cell Line	embryonic stem cell

Quick Search: