Variant report

Variant	rs11611513
Chromosome Location	chr12:44801297-44801298
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11182500	0.92[EUR][1000 genomes]
rs11610751	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11612006	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11613516	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1316959	0.82[CEU][hapmap];0.82[TSI][hapmap]
rs1353144	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1353148	0.82[CEU][hapmap]
rs17094591	0.98[EUR][1000 genomes]
rs17094614	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17094655	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1817884	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1873977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1873979	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55636254	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56367710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57180808	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7304503	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73092522	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092524	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7309287	0.96[EUR][1000 genomes]
rs73094350	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73094362	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73094373	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs765530	0.96[EUR][1000 genomes]
rs869629	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1038498	chr12:44679455-44816572	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44799600-44802400	Weak transcription	H1 Cell Line	embryonic stem cell

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