Variant report

Variant	rs17094591
Chromosome Location	chr12:44791399-44791400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11182500	0.91[EUR][1000 genomes]
rs11610751	0.94[EUR][1000 genomes]
rs11611513	0.98[EUR][1000 genomes]
rs11612006	0.94[EUR][1000 genomes]
rs11613516	0.98[EUR][1000 genomes]
rs1316959	0.82[TSI][hapmap]
rs1353144	0.98[EUR][1000 genomes]
rs17094614	0.98[EUR][1000 genomes]
rs17094655	0.94[EUR][1000 genomes]
rs1817884	0.94[EUR][1000 genomes]
rs1873977	0.98[EUR][1000 genomes]
rs1873979	0.98[EUR][1000 genomes]
rs55636254	1.00[EUR][1000 genomes]
rs56367710	0.98[EUR][1000 genomes]
rs57180808	0.94[EUR][1000 genomes]
rs7304503	0.94[EUR][1000 genomes]
rs73092522	0.98[EUR][1000 genomes]
rs73092524	0.98[EUR][1000 genomes]
rs7309287	0.94[EUR][1000 genomes]
rs73094350	0.98[EUR][1000 genomes]
rs73094362	0.96[EUR][1000 genomes]
rs73094373	0.94[EUR][1000 genomes]
rs765530	0.94[EUR][1000 genomes]
rs869629	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1038498	chr12:44679455-44816572	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44791000-44791400	Enhancers	Fetal Lung	lung
2	chr12:44791000-44792200	Enhancers	Brain Germinal Matrix	brain
3	chr12:44791200-44791400	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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