Variant report

Variant	rs17094666
Chromosome Location	chr12:44850296-44850297
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10506245	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10785500	1.00[CHB][hapmap]
rs11837624	1.00[ASN][1000 genomes]
rs1452263	1.00[CHB][hapmap]
rs1493758	1.00[ASN][1000 genomes]
rs1527315	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1622682	1.00[CHB][hapmap]
rs1625442	1.00[CHB][hapmap]
rs1643432	1.00[CHB][hapmap]
rs1644007	1.00[CHB][hapmap]
rs1644014	1.00[CHB][hapmap]
rs1716605	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1716609	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1726874	1.00[CHB][hapmap]
rs1726884	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1726887	1.00[CHB][hapmap]
rs1726889	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1726890	1.00[CHB][hapmap]
rs1798020	1.00[CHB][hapmap]
rs1798023	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1798027	1.00[CHB][hapmap]
rs1798032	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4639992	1.00[JPT][hapmap]
rs4768559	1.00[JPT][hapmap]
rs55726837	1.00[ASN][1000 genomes]
rs7304503	1.00[ASN][1000 genomes]
rs7309287	1.00[ASN][1000 genomes]
rs7314412	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73276296	1.00[ASN][1000 genomes]
rs73276299	1.00[ASN][1000 genomes]
rs7969466	1.00[JPT][hapmap]
rs840773	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs840774	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs859016	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs863482	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44849600-44851800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr12:44850000-44850600	Genic enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:44850200-44850400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:44850200-44850600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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