Variant report

Variant	rs55702001
Chromosome Location	chr12:44901259-44901260
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10880646	0.97[EUR][1000 genomes]
rs1316959	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1353148	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55726837	0.86[EUR][1000 genomes]
rs55761438	0.83[EUR][1000 genomes]
rs55882010	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55921214	0.97[EUR][1000 genomes]
rs56126066	0.83[EUR][1000 genomes]
rs56204845	0.83[EUR][1000 genomes]
rs56209461	0.83[EUR][1000 genomes]
rs56246701	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56286815	0.97[EUR][1000 genomes]
rs68098210	0.83[EUR][1000 genomes]
rs73088671	0.83[EUR][1000 genomes]
rs73088684	0.83[EUR][1000 genomes]
rs73088689	0.83[EUR][1000 genomes]
rs73088699	0.83[EUR][1000 genomes]
rs73088702	0.83[EUR][1000 genomes]
rs73090608	0.83[EUR][1000 genomes]
rs73090670	0.83[EUR][1000 genomes]
rs73090675	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73090676	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73090679	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73090681	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73090683	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73090698	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73090700	0.83[EUR][1000 genomes]
rs73092503	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73092504	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73092506	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73092508	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73092511	0.83[EUR][1000 genomes]
rs73094321	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73094394	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73094402	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73096308	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73096318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73096329	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44894800-44901400	Weak transcription	Brain Germinal Matrix	brain
2	chr12:44894800-44901400	Weak transcription	Fetal Brain Female	brain
3	chr12:44898600-44904800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr12:44900000-44901600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:44900200-44912600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr12:44900200-44915400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr12:44900600-44901400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:44901200-44902800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr12:44901200-44913800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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