Variant report
| Variant | rs10880646 |
|---|---|
| Chromosome Location | chr12:44882610-44882611 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs1316959 | 1.00[CEU][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes] |
| rs1353148 | 1.00[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs55702001 | 0.97[EUR][1000 genomes] |
| rs55726837 | 0.89[EUR][1000 genomes] |
| rs55761438 | 0.85[EUR][1000 genomes] |
| rs55882010 | 1.00[EUR][1000 genomes] |
| rs55921214 | 1.00[EUR][1000 genomes] |
| rs56126066 | 0.85[EUR][1000 genomes] |
| rs56204845 | 0.85[EUR][1000 genomes] |
| rs56209461 | 0.85[EUR][1000 genomes] |
| rs56246701 | 0.94[EUR][1000 genomes] |
| rs56286815 | 1.00[EUR][1000 genomes] |
| rs68098210 | 0.85[EUR][1000 genomes] |
| rs73088671 | 0.85[EUR][1000 genomes] |
| rs73088684 | 0.85[EUR][1000 genomes] |
| rs73088689 | 0.85[EUR][1000 genomes] |
| rs73088699 | 0.85[EUR][1000 genomes] |
| rs73088702 | 0.85[EUR][1000 genomes] |
| rs73090608 | 0.85[EUR][1000 genomes] |
| rs73090670 | 0.85[EUR][1000 genomes] |
| rs73090675 | 0.85[EUR][1000 genomes] |
| rs73090676 | 0.85[EUR][1000 genomes] |
| rs73090679 | 0.85[EUR][1000 genomes] |
| rs73090681 | 0.85[EUR][1000 genomes] |
| rs73090683 | 0.85[EUR][1000 genomes] |
| rs73090698 | 0.85[EUR][1000 genomes] |
| rs73090700 | 0.85[EUR][1000 genomes] |
| rs73092503 | 0.85[EUR][1000 genomes] |
| rs73092504 | 0.85[EUR][1000 genomes] |
| rs73092506 | 0.85[EUR][1000 genomes] |
| rs73092508 | 0.85[EUR][1000 genomes] |
| rs73092511 | 0.85[EUR][1000 genomes] |
| rs73094321 | 0.88[EUR][1000 genomes] |
| rs73094394 | 1.00[EUR][1000 genomes] |
| rs73094402 | 1.00[EUR][1000 genomes] |
| rs73096308 | 1.00[EUR][1000 genomes] |
| rs73096318 | 1.00[EUR][1000 genomes] |
| rs73096329 | 0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049818 | chr12:44486312-45133783 | Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:44880600-44888400 | Weak transcription | Pancreas | Pancrea |
