Variant report

Variant	rs56246701
Chromosome Location	chr12:44854840-44854841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10880646	0.94[EUR][1000 genomes]
rs1316959	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1353148	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55702001	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55726837	0.94[EUR][1000 genomes]
rs55761438	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55882010	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55921214	0.94[EUR][1000 genomes]
rs56126066	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56204845	0.91[EUR][1000 genomes]
rs56209461	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56286815	0.94[EUR][1000 genomes]
rs68098210	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73086772	0.91[AMR][1000 genomes]
rs73086790	0.83[AMR][1000 genomes]
rs73086798	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73088659	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73088660	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73088663	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73088667	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73088671	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73088684	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73088689	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73088699	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73088702	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73090608	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73090670	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73090675	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73090676	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73090679	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73090681	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73090683	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73090698	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73090700	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73092503	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73092504	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73092506	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73092508	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73092511	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73094321	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73094394	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73094402	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73096308	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73096318	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73096329	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44851800-44857400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:44852200-44857200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr12:44852200-44859600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links