Variant report

Variant	rs73088684
Chromosome Location	chr12:44732950-44732951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10880646	0.85[EUR][1000 genomes]
rs1316959	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1353148	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55702001	0.83[EUR][1000 genomes]
rs55726837	0.86[EUR][1000 genomes]
rs55761438	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55882010	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55921214	0.85[EUR][1000 genomes]
rs56126066	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56204845	1.00[EUR][1000 genomes]
rs56209461	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56246701	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56286815	0.85[EUR][1000 genomes]
rs68098210	1.00[EUR][1000 genomes]
rs73086772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73086790	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73086798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73088659	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73088660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73088663	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73088667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73088671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73088689	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73088699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73088702	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73090608	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73090670	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73090675	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73090676	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73090679	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73090681	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73090683	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73090698	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73090700	1.00[EUR][1000 genomes]
rs73092503	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092504	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092506	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092508	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092511	1.00[EUR][1000 genomes]
rs73094321	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73094394	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73094402	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73096308	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73096318	0.85[EUR][1000 genomes]
rs73096329	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1038498	chr12:44679455-44816572	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv826356	chr12:44725069-44783443	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44699000-44736000	Weak transcription	Pancreas	Pancrea
2	chr12:44699000-44782000	Weak transcription	Aorta	Aorta
3	chr12:44709200-44743200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:44712400-44765800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:44728400-44744800	Weak transcription	Esophagus	oesophagus
6	chr12:44732400-44735600	Weak transcription	Ovary	ovary
7	chr12:44732600-44733000	Enhancers	HMEC	breast
8	chr12:44732800-44733200	Enhancers	Colon Smooth Muscle	Colon
9	chr12:44732800-44736000	Weak transcription	Stomach Smooth Muscle	stomach

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