Variant report

Variant	rs73088680
Chromosome Location	chr4:18317081-18317082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs41409849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57770817	1.00[AMR][1000 genomes]
rs59263365	1.00[AMR][1000 genomes]
rs60019821	1.00[AMR][1000 genomes]
rs73088683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73088697	1.00[AMR][1000 genomes]
rs73092597	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094303	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094304	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094306	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094307	0.85[AFR][1000 genomes]
rs73094314	1.00[AMR][1000 genomes]
rs73094315	1.00[AMR][1000 genomes]
rs73094326	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094330	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094333	1.00[AMR][1000 genomes]
rs73094335	1.00[AMR][1000 genomes]
rs73094353	1.00[AMR][1000 genomes]
rs73094357	1.00[AMR][1000 genomes]
rs73096366	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18315400-18320200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:18317000-18320600	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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