Variant report
| Variant | rs73094357 |
|---|---|
| Chromosome Location | chr4:18444361-18444362 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:18439763..18441872-chr4:18443790..18445400,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:44)
| rs_ID | r2[population] |
|---|---|
| rs1847898 | 1.00[AMR][1000 genomes] |
| rs41409849 | 1.00[AMR][1000 genomes] |
| rs56882349 | 1.00[AMR][1000 genomes] |
| rs57770817 | 1.00[AMR][1000 genomes] |
| rs59263365 | 1.00[AMR][1000 genomes] |
| rs60019821 | 1.00[AMR][1000 genomes] |
| rs61138016 | 1.00[AMR][1000 genomes] |
| rs73088680 | 1.00[AMR][1000 genomes] |
| rs73088683 | 1.00[AMR][1000 genomes] |
| rs73088697 | 1.00[AMR][1000 genomes] |
| rs73092597 | 1.00[AMR][1000 genomes] |
| rs73094303 | 1.00[AMR][1000 genomes] |
| rs73094304 | 1.00[AMR][1000 genomes] |
| rs73094306 | 1.00[AMR][1000 genomes] |
| rs73094314 | 1.00[AMR][1000 genomes] |
| rs73094315 | 1.00[AMR][1000 genomes] |
| rs73094326 | 1.00[AMR][1000 genomes] |
| rs73094330 | 1.00[AMR][1000 genomes] |
| rs73094333 | 1.00[AMR][1000 genomes] |
| rs73094335 | 1.00[AMR][1000 genomes] |
| rs73094353 | 1.00[AMR][1000 genomes] |
| rs73094359 | 0.94[AFR][1000 genomes] |
| rs73094371 | 0.84[AFR][1000 genomes] |
| rs73094392 | 0.84[AFR][1000 genomes] |
| rs73096316 | 0.88[AFR][1000 genomes] |
| rs73096330 | 0.88[AFR][1000 genomes] |
| rs73096333 | 0.88[AFR][1000 genomes] |
| rs73096366 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73096384 | 0.82[AFR][1000 genomes] |
| rs73096385 | 0.82[AFR][1000 genomes] |
| rs73096394 | 1.00[AMR][1000 genomes] |
| rs73096396 | 1.00[AMR][1000 genomes] |
| rs73096400 | 1.00[AMR][1000 genomes] |
| rs73098304 | 1.00[AMR][1000 genomes] |
| rs73098305 | 1.00[AMR][1000 genomes] |
| rs73098307 | 1.00[AMR][1000 genomes] |
| rs73098312 | 1.00[AMR][1000 genomes] |
| rs73098315 | 1.00[AMR][1000 genomes] |
| rs73098320 | 1.00[AMR][1000 genomes] |
| rs73098328 | 1.00[AMR][1000 genomes] |
| rs73098331 | 1.00[AMR][1000 genomes] |
| rs73098333 | 1.00[AMR][1000 genomes] |
| rs73098358 | 1.00[AMR][1000 genomes] |
| rs73098373 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1003931 | chr4:18241575-18849898 | Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv533087 | chr4:18362040-19176896 | Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv1012283 | chr4:18436363-18477654 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:18442800-18444600 | Weak transcription | Fetal Intestine Large | intestine |
| 2 | chr4:18443000-18445000 | Weak transcription | Fetal Intestine Small | intestine |
