Variant report

Variant	rs73098315
Chromosome Location	chr4:18523729-18523730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1847898	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56882349	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57770817	1.00[AMR][1000 genomes]
rs59263365	1.00[AMR][1000 genomes]
rs60019821	1.00[AMR][1000 genomes]
rs61138016	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73092597	1.00[AMR][1000 genomes]
rs73094303	1.00[AMR][1000 genomes]
rs73094304	1.00[AMR][1000 genomes]
rs73094306	1.00[AMR][1000 genomes]
rs73094314	1.00[AMR][1000 genomes]
rs73094315	1.00[AMR][1000 genomes]
rs73094326	1.00[AMR][1000 genomes]
rs73094330	1.00[AMR][1000 genomes]
rs73094333	1.00[AMR][1000 genomes]
rs73094335	1.00[AMR][1000 genomes]
rs73094353	1.00[AMR][1000 genomes]
rs73094357	1.00[AMR][1000 genomes]
rs73096316	0.83[AFR][1000 genomes]
rs73096330	0.83[AFR][1000 genomes]
rs73096333	0.83[AFR][1000 genomes]
rs73096366	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73096384	0.88[AFR][1000 genomes]
rs73096385	0.88[AFR][1000 genomes]
rs73096394	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73096396	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73096400	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73098304	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73098305	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73098307	1.00[AMR][1000 genomes]
rs73098310	0.92[AFR][1000 genomes]
rs73098312	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73098320	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73098328	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73098331	1.00[AMR][1000 genomes]
rs73098333	1.00[AMR][1000 genomes]
rs73098358	1.00[AMR][1000 genomes]
rs73098373	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18520400-18524000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:18523600-18523800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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