Variant report

Variant	rs73096400
Chromosome Location	chr4:18514887-18514888
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1847898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56882349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57770817	1.00[AMR][1000 genomes]
rs59263365	1.00[AMR][1000 genomes]
rs60019821	1.00[AMR][1000 genomes]
rs61138016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73088697	1.00[AMR][1000 genomes]
rs73092597	1.00[AMR][1000 genomes]
rs73094303	1.00[AMR][1000 genomes]
rs73094304	1.00[AMR][1000 genomes]
rs73094306	1.00[AMR][1000 genomes]
rs73094314	1.00[AMR][1000 genomes]
rs73094315	1.00[AMR][1000 genomes]
rs73094326	1.00[AMR][1000 genomes]
rs73094330	1.00[AMR][1000 genomes]
rs73094333	1.00[AMR][1000 genomes]
rs73094335	1.00[AMR][1000 genomes]
rs73094353	1.00[AMR][1000 genomes]
rs73094357	1.00[AMR][1000 genomes]
rs73094359	0.81[AFR][1000 genomes]
rs73096316	0.86[AFR][1000 genomes]
rs73096330	0.86[AFR][1000 genomes]
rs73096333	0.86[AFR][1000 genomes]
rs73096366	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73096384	0.92[AFR][1000 genomes]
rs73096385	0.92[AFR][1000 genomes]
rs73096394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73096396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73098304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73098305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73098307	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73098310	1.00[AFR][1000 genomes]
rs73098312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73098315	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73098320	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73098328	1.00[AMR][1000 genomes]
rs73098331	1.00[AMR][1000 genomes]
rs73098333	1.00[AMR][1000 genomes]
rs73098358	1.00[AMR][1000 genomes]
rs73098373	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18509000-18515200	Weak transcription	Fetal Intestine Small	intestine
2	chr4:18513400-18515000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:18514600-18515200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr4:18514600-18519600	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links