Variant report
| Variant | rs73098373 |
|---|---|
| Chromosome Location | chr4:18605309-18605310 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:27529118..27531898-chr4:18603633..18606558,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000107897 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1847898 | 1.00[AMR][1000 genomes] |
| rs56882349 | 1.00[AMR][1000 genomes] |
| rs61138016 | 1.00[AMR][1000 genomes] |
| rs73094333 | 1.00[AMR][1000 genomes] |
| rs73094335 | 1.00[AMR][1000 genomes] |
| rs73094353 | 1.00[AMR][1000 genomes] |
| rs73094357 | 1.00[AMR][1000 genomes] |
| rs73096366 | 1.00[AMR][1000 genomes] |
| rs73096394 | 1.00[AMR][1000 genomes] |
| rs73096396 | 1.00[AMR][1000 genomes] |
| rs73096400 | 1.00[AMR][1000 genomes] |
| rs73098304 | 1.00[AMR][1000 genomes] |
| rs73098305 | 1.00[AMR][1000 genomes] |
| rs73098307 | 1.00[AMR][1000 genomes] |
| rs73098312 | 1.00[AMR][1000 genomes] |
| rs73098315 | 1.00[AMR][1000 genomes] |
| rs73098320 | 1.00[AMR][1000 genomes] |
| rs73098328 | 1.00[AMR][1000 genomes] |
| rs73098331 | 1.00[AMR][1000 genomes] |
| rs73098333 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73098358 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1003931 | chr4:18241575-18849898 | Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv533087 | chr4:18362040-19176896 | Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv532708 | chr4:18596861-19176896 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
