Variant report

Variant	rs57770817
Chromosome Location	chr4:18414680-18414681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1847898	1.00[AMR][1000 genomes]
rs41409849	1.00[AMR][1000 genomes]
rs56882349	1.00[AMR][1000 genomes]
rs59263365	1.00[AMR][1000 genomes]
rs60019821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61138016	1.00[AMR][1000 genomes]
rs73088680	1.00[AMR][1000 genomes]
rs73088683	1.00[AMR][1000 genomes]
rs73088697	1.00[AMR][1000 genomes]
rs73092597	1.00[AMR][1000 genomes]
rs73094303	1.00[AMR][1000 genomes]
rs73094304	1.00[AMR][1000 genomes]
rs73094306	1.00[AMR][1000 genomes]
rs73094314	1.00[AMR][1000 genomes]
rs73094315	1.00[AMR][1000 genomes]
rs73094326	1.00[AMR][1000 genomes]
rs73094330	1.00[AMR][1000 genomes]
rs73094333	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094335	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73094353	1.00[AMR][1000 genomes]
rs73094357	1.00[AMR][1000 genomes]
rs73096366	1.00[AMR][1000 genomes]
rs73096394	1.00[AMR][1000 genomes]
rs73096396	1.00[AMR][1000 genomes]
rs73096400	1.00[AMR][1000 genomes]
rs73098304	1.00[AMR][1000 genomes]
rs73098305	1.00[AMR][1000 genomes]
rs73098307	1.00[AMR][1000 genomes]
rs73098312	1.00[AMR][1000 genomes]
rs73098315	1.00[AMR][1000 genomes]
rs73098320	1.00[AMR][1000 genomes]
rs73098328	1.00[AMR][1000 genomes]
rs73098331	1.00[AMR][1000 genomes]
rs73098333	1.00[AMR][1000 genomes]
rs73098358	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18413200-18415000	Active TSS	Fetal Intestine Large	intestine
2	chr4:18413400-18414800	Active TSS	Fetal Intestine Small	intestine
3	chr4:18413600-18415800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:18414200-18419800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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