Variant report

Variant	rs73143859
Chromosome Location	chr5:97759678-97759679
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1455421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2124262	1.00[AMR][1000 genomes]
rs57186366	1.00[AMR][1000 genomes]
rs57817463	1.00[AMR][1000 genomes]
rs6898848	1.00[AMR][1000 genomes]
rs73143803	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143804	1.00[AMR][1000 genomes]
rs73143839	1.00[AMR][1000 genomes]
rs73143842	1.00[AMR][1000 genomes]
rs73143845	1.00[AMR][1000 genomes]
rs73143847	1.00[AMR][1000 genomes]
rs73143853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143866	1.00[AMR][1000 genomes]
rs73143879	1.00[AMR][1000 genomes]
rs73159206	1.00[AMR][1000 genomes]
rs73159235	1.00[AMR][1000 genomes]
rs73159240	1.00[AMR][1000 genomes]
rs73159247	1.00[AMR][1000 genomes]
rs73159254	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97752000-97760000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:97752000-97760200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:97755200-97763800	Weak transcription	Small Intestine	intestine
4	chr5:97755200-97764400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:97755800-97761800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:97756000-97760200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:97758800-97760400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:97758800-97760400	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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