Variant report

Variant	rs73148944
Chromosome Location	chr3:145819270-145819271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:145808540..145810799-chr3:145816596..145819414,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17412259	1.00[AFR][1000 genomes]
rs2864795	0.81[EUR][1000 genomes]
rs3762690	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4681295	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4681296	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4681298	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4681300	0.83[EUR][1000 genomes]
rs6780480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73148913	1.00[AFR][1000 genomes]
rs73148936	1.00[AFR][1000 genomes]
rs73148974	0.84[EUR][1000 genomes]
rs73148977	0.83[EUR][1000 genomes]
rs73148979	0.82[EUR][1000 genomes]
rs73148981	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73148992	0.83[EUR][1000 genomes]
rs73148994	0.83[EUR][1000 genomes]
rs73148996	0.83[EUR][1000 genomes]
rs73148997	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877584	chr3:144903957-145833232	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv525829	chr3:145614317-145863779	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv4046	chr3:145693249-145880189	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145777000-145819400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:145779600-145820600	Weak transcription	Fetal Kidney	kidney
3	chr3:145780600-145820400	Weak transcription	Placenta	Placenta
4	chr3:145780800-145819800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr3:145781800-145831800	Weak transcription	Psoas Muscle	Psoas
6	chr3:145782800-145843200	Weak transcription	Pancreas	Pancrea
7	chr3:145784600-145848800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:145785200-145819400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:145789200-145830800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:145790000-145819800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr3:145790200-145819400	Weak transcription	Left Ventricle	heart
12	chr3:145790400-145843200	Weak transcription	Right Ventricle	heart
13	chr3:145791600-145833800	Weak transcription	NHDF-Ad	bronchial
14	chr3:145794400-145827000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:145794400-145828000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:145796200-145821400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr3:145798800-145839200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr3:145808600-145833000	Weak transcription	Fetal Lung	lung
19	chr3:145809200-145821600	Weak transcription	HMEC	breast
20	chr3:145810200-145823400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:145810400-145829000	Weak transcription	NHLF	lung
22	chr3:145810400-145830800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:145810400-145849800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr3:145810600-145827200	Weak transcription	Small Intestine	intestine
25	chr3:145810800-145851200	Weak transcription	Brain Hippocampus Middle	brain
26	chr3:145812000-145826000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr3:145812000-145826800	Weak transcription	Aorta	Aorta
28	chr3:145812200-145819400	Weak transcription	Fetal Heart	heart
29	chr3:145812200-145839200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr3:145812400-145819400	Weak transcription	Colon Smooth Muscle	Colon
31	chr3:145813400-145819800	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr3:145814200-145841000	Weak transcription	Lung	lung
33	chr3:145814600-145828200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr3:145815600-145824000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr3:145815600-145824400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr3:145815600-145825200	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr3:145815600-145825400	Strong transcription	HSMM	muscle
38	chr3:145815800-145830000	Strong transcription	Osteobl	bone
39	chr3:145816000-145820000	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr3:145816000-145836800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr3:145816400-145842000	Weak transcription	Colonic Mucosa	Colon
42	chr3:145817200-145819800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr3:145817400-145819400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr3:145817800-145824400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr3:145818000-145823000	Weak transcription	Right Atrium	heart
46	chr3:145818000-145825600	Weak transcription	Fetal Intestine Small	intestine
47	chr3:145818000-145827400	Strong transcription	Fetal Intestine Large	intestine
48	chr3:145818000-145829800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr3:145818200-145820000	Genic enhancers	HepG2	liver
50	chr3:145818200-145821000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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