Variant report

Variant	rs73148974
Chromosome Location	chr3:145850284-145850285
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:145786382..145788003-chr3:145848054..145850516,2	MCF-7	breast:
2	chr3:145847747..145850479-chr3:145851136..145852882,2	MCF-7	breast:
3	chr1:156706457..156707966-chr3:145848745..145851491,2	MCF-7	breast:
4	chr3:145848591..145850350-chr3:145877768..145879975,2	MCF-7	breast:
5	chr3:145848518..145850304-chr3:145857520..145859905,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152952	Chromatin interaction
ENSG00000240032	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17412259	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2864795	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34803917	0.96[EUR][1000 genomes]
rs3762690	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4681295	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4681296	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4681298	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4681300	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6780480	0.84[EUR][1000 genomes]
rs73148913	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73148936	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73148944	0.84[EUR][1000 genomes]
rs73148977	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73148979	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73148981	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73148992	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73148994	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73148996	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73148997	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525829	chr3:145614317-145863779	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv4046	chr3:145693249-145880189	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv877613	chr3:145833232-145912055	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145810800-145851200	Weak transcription	Brain Hippocampus Middle	brain
2	chr3:145827000-145855200	Weak transcription	Aorta	Aorta
3	chr3:145832000-145870800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:145834200-145851200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:145834400-145851400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr3:145834600-145852800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:145835200-145851200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:145835200-145852200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:145835600-145851200	Weak transcription	Fetal Kidney	kidney
10	chr3:145835800-145874000	Weak transcription	Psoas Muscle	Psoas
11	chr3:145836000-145852400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr3:145837000-145852400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr3:145837200-145851200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr3:145839800-145851400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr3:145840000-145852400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:145840400-145874000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr3:145843400-145851200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr3:145843600-145855200	Weak transcription	Left Ventricle	heart
19	chr3:145843600-145861200	Weak transcription	Right Ventricle	heart
20	chr3:145844000-145851200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr3:145844600-145856000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr3:145844600-145860600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr3:145845200-145850600	Enhancers	Colon Smooth Muscle	Colon
24	chr3:145847600-145851200	Weak transcription	Adipose Nuclei	Adipose
25	chr3:145847800-145851200	Weak transcription	Fetal Lung	lung
26	chr3:145847800-145851600	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr3:145848000-145856800	Weak transcription	Fetal Intestine Small	intestine
28	chr3:145848400-145851600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:145848800-145850400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:145848800-145850600	Enhancers	NH-A	brain
31	chr3:145849000-145850400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr3:145849000-145851200	Weak transcription	Fetal Intestine Large	intestine
33	chr3:145849000-145851200	Weak transcription	Right Atrium	heart
34	chr3:145849000-145851200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr3:145849200-145850400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:145849200-145850600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr3:145849200-145850800	Enhancers	HSMM	muscle
38	chr3:145849200-145851200	Weak transcription	Fetal Stomach	stomach
39	chr3:145849400-145850600	Enhancers	HUVEC	blood vessel
40	chr3:145849600-145850600	Enhancers	Fetal Heart	heart
41	chr3:145849600-145852400	Enhancers	NHDF-Ad	bronchial
42	chr3:145849600-145852600	Enhancers	HSMMtube	muscle
43	chr3:145849800-145850400	Enhancers	HMEC	breast
44	chr3:145849800-145850400	Enhancers	NHEK	skin
45	chr3:145849800-145853000	Enhancers	Liver	Liver
46	chr3:145850000-145851200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr3:145850000-145851200	Weak transcription	Ovary	ovary
48	chr3:145850000-145851200	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr3:145850000-145852200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr3:145850000-145852800	Enhancers	Muscle Satellite Cultured Cells	--

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