Variant report

Variant	rs73148977
Chromosome Location	chr3:145856875-145856876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:145851729..145854083-chr3:145855117..145857839,4	MCF-7	breast:
2	chr3:145856481..145858828-chr3:145868804..145871513,3	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17412259	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2864795	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34803917	0.97[EUR][1000 genomes]
rs3762690	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4681295	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4681296	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4681298	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4681300	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6780480	0.83[EUR][1000 genomes]
rs73148913	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73148936	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73148944	0.83[EUR][1000 genomes]
rs73148974	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73148979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73148981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73148992	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73148994	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73148996	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73148997	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525829	chr3:145614317-145863779	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv4046	chr3:145693249-145880189	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv877613	chr3:145833232-145912055	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145832000-145870800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:145835800-145874000	Weak transcription	Psoas Muscle	Psoas
3	chr3:145840400-145874000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:145843600-145861200	Weak transcription	Right Ventricle	heart
5	chr3:145844600-145860600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:145850200-145857600	Weak transcription	NHLF	lung
7	chr3:145850400-145860200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:145850400-145864400	Weak transcription	HMEC	breast
9	chr3:145851400-145857600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:145851600-145857400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:145851600-145860400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:145851600-145864200	Weak transcription	Right Atrium	heart
13	chr3:145851800-145857600	Weak transcription	HUVEC	blood vessel
14	chr3:145852200-145857600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:145852400-145857800	Weak transcription	Fetal Intestine Large	intestine
16	chr3:145852600-145857400	Weak transcription	HSMMtube	muscle
17	chr3:145852600-145858000	Weak transcription	Small Intestine	intestine
18	chr3:145852600-145860400	Weak transcription	NH-A	brain
19	chr3:145852800-145857200	Weak transcription	NHDF-Ad	bronchial
20	chr3:145852800-145857600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:145852800-145860600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr3:145853000-145857000	Weak transcription	Liver	Liver
23	chr3:145853000-145857200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr3:145853000-145857200	Weak transcription	Fetal Kidney	kidney
25	chr3:145853000-145857400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr3:145853000-145857400	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr3:145853000-145857600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr3:145853000-145857600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:145853000-145857600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr3:145853200-145860400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr3:145853200-145861600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr3:145853400-145857400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr3:145853600-145857400	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr3:145855000-145857400	Weak transcription	Osteobl	bone
35	chr3:145855200-145857200	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr3:145855200-145858800	Enhancers	Aorta	Aorta
37	chr3:145855400-145860400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr3:145855600-145858200	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr3:145855800-145857600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr3:145855800-145862000	Enhancers	Fetal Stomach	stomach
41	chr3:145856000-145857400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr3:145856000-145858200	Enhancers	Ovary	ovary
43	chr3:145856000-145861400	Enhancers	Rectal Smooth Muscle	rectum
44	chr3:145856200-145857400	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr3:145856200-145858000	Enhancers	Brain Substantia Nigra	brain
46	chr3:145856200-145858600	Enhancers	Stomach Smooth Muscle	stomach
47	chr3:145856200-145859200	Enhancers	Adipose Nuclei	Adipose
48	chr3:145856200-145860200	Enhancers	Colon Smooth Muscle	Colon
49	chr3:145856200-145862200	Enhancers	Fetal Heart	heart
50	chr3:145856400-145861200	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links