Variant report

Variant	rs73153580
Chromosome Location	chr12:82874463-82874464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10506872	0.81[AMR][1000 genomes]
rs10506873	0.81[AMR][1000 genomes]
rs17712868	0.81[AMR][1000 genomes]
rs17712927	0.81[AMR][1000 genomes]
rs17719063	0.81[AMR][1000 genomes]
rs17774157	0.81[AMR][1000 genomes]
rs17774489	0.81[AMR][1000 genomes]
rs17774872	0.81[AMR][1000 genomes]
rs17775025	0.81[AMR][1000 genomes]
rs17775169	0.81[AMR][1000 genomes]
rs17776036	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7294780	0.81[AMR][1000 genomes]
rs7294918	0.81[AMR][1000 genomes]
rs7295042	0.81[AMR][1000 genomes]
rs73149595	0.81[AMR][1000 genomes]
rs73149597	0.81[AMR][1000 genomes]
rs73151403	0.81[AMR][1000 genomes]
rs73151413	0.81[AMR][1000 genomes]
rs73151422	0.81[AMR][1000 genomes]
rs73151425	0.81[AMR][1000 genomes]
rs73151445	0.81[AMR][1000 genomes]
rs73151447	0.81[AMR][1000 genomes]
rs73151450	0.81[AMR][1000 genomes]
rs73151460	0.81[AMR][1000 genomes]
rs73151484	0.81[AMR][1000 genomes]
rs73151489	0.81[AMR][1000 genomes]
rs73151496	0.81[AMR][1000 genomes]
rs73153504	0.81[AMR][1000 genomes]
rs73153509	0.81[AMR][1000 genomes]
rs73153526	0.81[AMR][1000 genomes]
rs73153530	0.81[AMR][1000 genomes]
rs73153534	0.81[AMR][1000 genomes]
rs73153539	0.81[AMR][1000 genomes]
rs73153551	0.81[AMR][1000 genomes]
rs73153559	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73153561	0.81[AMR][1000 genomes]
rs73153569	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73153571	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73153572	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73153573	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73153577	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73153578	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73153584	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73153585	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73153587	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73155406	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559539	chr12:82280797-82896218	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1041954	chr12:82314981-83008609	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv541550	chr12:82314981-83008609	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1053093	chr12:82645292-83287809	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv541551	chr12:82645292-83287809	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv559541	chr12:82715210-83108395	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv899348	chr12:82744187-83169297	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	esv1841396	chr12:82768717-82881082	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv519197	chr12:82831845-83056476	Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:82837800-82876400	Weak transcription	Psoas Muscle	Psoas
2	chr12:82868000-82874600	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr12:82869000-82876000	Weak transcription	Adipose Nuclei	Adipose
4	chr12:82872000-82878200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr12:82873000-82874800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr12:82873200-82876400	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr12:82873600-82880400	Weak transcription	HUVEC	blood vessel
8	chr12:82874200-82880800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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