Variant report

Variant	rs73153573
Chromosome Location	chr12:82867145-82867146
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:82867133-82867147	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
METTL25	TF binding region

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10506869	1.00[ASN][1000 genomes]
rs10506872	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10506873	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10735453	1.00[ASN][1000 genomes]
rs10746242	1.00[ASN][1000 genomes]
rs10746244	1.00[ASN][1000 genomes]
rs10746245	1.00[ASN][1000 genomes]
rs10778888	1.00[ASN][1000 genomes]
rs10778889	1.00[ASN][1000 genomes]
rs10778895	1.00[ASN][1000 genomes]
rs10778902	1.00[ASN][1000 genomes]
rs10862480	1.00[ASN][1000 genomes]
rs10862482	1.00[ASN][1000 genomes]
rs11115240	1.00[ASN][1000 genomes]
rs11115241	1.00[ASN][1000 genomes]
rs11115242	1.00[ASN][1000 genomes]
rs11115308	1.00[ASN][1000 genomes]
rs11831879	1.00[ASN][1000 genomes]
rs11832758	1.00[ASN][1000 genomes]
rs11835324	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11836773	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1494023	1.00[ASN][1000 genomes]
rs1494024	1.00[ASN][1000 genomes]
rs17711838	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17712868	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17712927	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17719063	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17719970	1.00[ASN][1000 genomes]
rs17720305	1.00[ASN][1000 genomes]
rs17773938	1.00[ASN][1000 genomes]
rs17774157	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17774489	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17774872	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17775025	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17775169	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17776036	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17776290	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17776375	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17776885	1.00[ASN][1000 genomes]
rs2401034	1.00[ASN][1000 genomes]
rs2401035	1.00[ASN][1000 genomes]
rs2642010	1.00[ASN][1000 genomes]
rs2717446	1.00[ASN][1000 genomes]
rs2731287	1.00[ASN][1000 genomes]
rs2895914	1.00[ASN][1000 genomes]
rs2896434	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34638401	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34775923	1.00[ASN][1000 genomes]
rs4143188	1.00[ASN][1000 genomes]
rs4143189	1.00[ASN][1000 genomes]
rs4319577	1.00[ASN][1000 genomes]
rs4411333	1.00[ASN][1000 genomes]
rs4491327	1.00[ASN][1000 genomes]
rs4495950	1.00[ASN][1000 genomes]
rs4882453	1.00[ASN][1000 genomes]
rs4882526	1.00[ASN][1000 genomes]
rs4882527	1.00[ASN][1000 genomes]
rs4882528	1.00[ASN][1000 genomes]
rs4882530	1.00[ASN][1000 genomes]
rs57418508	1.00[ASN][1000 genomes]
rs6539659	1.00[ASN][1000 genomes]
rs6539662	1.00[ASN][1000 genomes]
rs7138488	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7294780	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7294918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7295042	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7304084	1.00[ASN][1000 genomes]
rs7306421	1.00[ASN][1000 genomes]
rs7311246	1.00[ASN][1000 genomes]
rs73149542	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73149557	1.00[ASN][1000 genomes]
rs73149567	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73149577	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73149595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73149597	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151403	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151413	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151422	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151425	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151445	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151447	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151450	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151460	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151496	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153504	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153509	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153526	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153530	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153534	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153539	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153551	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153561	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153569	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153571	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153577	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153578	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153580	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73153584	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153585	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153587	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153588	1.00[ASN][1000 genomes]
rs73153590	1.00[ASN][1000 genomes]
rs73153592	1.00[ASN][1000 genomes]
rs73153599	1.00[ASN][1000 genomes]
rs73155404	1.00[ASN][1000 genomes]
rs73155406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73155441	1.00[ASN][1000 genomes]
rs7488252	1.00[ASN][1000 genomes]
rs7956163	1.00[ASN][1000 genomes]
rs7957993	1.00[ASN][1000 genomes]
rs7960966	1.00[ASN][1000 genomes]
rs7964174	1.00[ASN][1000 genomes]
rs7966041	1.00[ASN][1000 genomes]
rs7967097	1.00[ASN][1000 genomes]
rs7968024	1.00[ASN][1000 genomes]
rs7971746	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559539	chr12:82280797-82896218	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1041954	chr12:82314981-83008609	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv541550	chr12:82314981-83008609	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1053093	chr12:82645292-83287809	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv541551	chr12:82645292-83287809	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv559541	chr12:82715210-83108395	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv899348	chr12:82744187-83169297	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	esv1841396	chr12:82768717-82881082	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv519197	chr12:82831845-83056476	Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:82804600-82869400	Weak transcription	Colon Smooth Muscle	Colon
2	chr12:82823200-82868000	Weak transcription	Brain Angular Gyrus	brain
3	chr12:82824200-82868200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr12:82832200-82869600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr12:82832400-82873400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr12:82832600-82869800	Weak transcription	Gastric	stomach
7	chr12:82834000-82874400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr12:82834600-82868200	Weak transcription	Colonic Mucosa	Colon
9	chr12:82836400-82868400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr12:82836400-82870000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr12:82837000-82868000	Weak transcription	Fetal Heart	heart
12	chr12:82837800-82876400	Weak transcription	Psoas Muscle	Psoas
13	chr12:82849800-82868600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr12:82853000-82869200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr12:82854000-82868400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr12:82856200-82868000	Weak transcription	HMEC	breast
17	chr12:82859600-82868000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr12:82861400-82867200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr12:82862800-82869600	Weak transcription	Pancreas	Pancrea
20	chr12:82862800-82873000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr12:82863000-82867400	Weak transcription	Liver	Liver
22	chr12:82863000-82868800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr12:82863200-82867600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr12:82863200-82868000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr12:82863200-82868400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr12:82864000-82868400	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr12:82864600-82868000	Weak transcription	NH-A	brain
28	chr12:82864800-82869600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr12:82865600-82867200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr12:82866200-82867200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
31	chr12:82866600-82867200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr12:82866600-82867200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
33	chr12:82866600-82867200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
34	chr12:82866600-82867200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr12:82866600-82867200	ZNF genes & repeats	Rectal Smooth Muscle	rectum
36	chr12:82866600-82867400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr12:82866600-82867400	Strong transcription	Right Ventricle	heart
38	chr12:82866600-82867800	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr12:82866600-82867800	Strong transcription	Stomach Smooth Muscle	stomach
40	chr12:82866600-82868000	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr12:82866600-82868000	Strong transcription	Brain Hippocampus Middle	brain
42	chr12:82866600-82868200	Strong transcription	Brain Inferior Temporal Lobe	brain
43	chr12:82866600-82868200	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr12:82866600-82868400	Strong transcription	Primary T cells from cord blood	blood
45	chr12:82866600-82869000	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr12:82866800-82867200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr12:82866800-82867200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr12:82866800-82867200	Enhancers	Adipose Nuclei	Adipose
49	chr12:82866800-82867200	ZNF genes & repeats	Esophagus	oesophagus
50	chr12:82866800-82867200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links