Variant report

Variant	rs73156584
Chromosome Location	chr3:155426604-155426605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17349560	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17415195	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17415343	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56213840	1.00[ASN][1000 genomes]
rs57149264	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6765861	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782387	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156593	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156598	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156600	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156602	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159011	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73159017	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73159021	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73159025	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73159026	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73159032	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73159054	1.00[ASN][1000 genomes]
rs73159063	1.00[ASN][1000 genomes]
rs73873405	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7615287	1.00[ASN][1000 genomes]
rs7615938	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7617878	1.00[ASN][1000 genomes]
rs7621415	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7641701	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7648978	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9757945	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9882341	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv829763	chr3:155417552-155470079	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155412600-155437400	Weak transcription	Pancreas	Pancrea
2	chr3:155413800-155432000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:155420200-155432200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:155422200-155427800	Weak transcription	Fetal Intestine Small	intestine
5	chr3:155423000-155431200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:155423200-155430200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:155423200-155431400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:155423200-155431400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:155423200-155432200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:155423400-155431200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:155423600-155427400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:155423600-155430600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:155423600-155431000	Weak transcription	HepG2	liver
14	chr3:155426000-155428800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:155426400-155431800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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