Variant report

Variant	rs57149264
Chromosome Location	chr3:155458914-155458915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155457303..155459109-chr3:155460905..155462872,3	MCF-7	breast:
2	chr3:155453978..155456582-chr3:155458063..155460908,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214919	Chromatin interaction
ENSG00000114805	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17349560	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17415195	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17415343	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56213840	1.00[ASN][1000 genomes]
rs58227176	1.00[ASN][1000 genomes]
rs6765861	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782387	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156584	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156598	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156600	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156602	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159011	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159017	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159021	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159025	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159026	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159032	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159054	1.00[ASN][1000 genomes]
rs73159063	1.00[ASN][1000 genomes]
rs73159074	1.00[ASN][1000 genomes]
rs73873405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7615287	1.00[ASN][1000 genomes]
rs7615938	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7617878	1.00[ASN][1000 genomes]
rs7621415	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7641701	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7648978	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9757945	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882341	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv829763	chr3:155417552-155470079	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
3	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155432400-155461600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:155449200-155461200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:155455800-155461400	Weak transcription	Brain Substantia Nigra	brain
4	chr3:155455800-155461400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:155456000-155460200	Weak transcription	Brain Anterior Caudate	brain
6	chr3:155456000-155461400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:155456200-155461200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:155456200-155461400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:155456200-155461400	Weak transcription	K562	blood
10	chr3:155456200-155461600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:155456400-155461400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr3:155456800-155461400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr3:155457000-155459200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:155457000-155461000	Weak transcription	Fetal Intestine Large	intestine
15	chr3:155457400-155460800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:155457600-155459800	Weak transcription	Fetal Intestine Small	intestine
17	chr3:155457600-155460400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr3:155457600-155460600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr3:155457600-155461400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr3:155457800-155459000	Weak transcription	A549	lung
21	chr3:155458000-155460600	Weak transcription	HepG2	liver
22	chr3:155458200-155459000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr3:155458200-155459800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr3:155458600-155459000	Enhancers	Fetal Kidney	kidney
25	chr3:155458600-155459200	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr3:155458600-155459800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:155458800-155459000	Enhancers	HUES64 Cell Line	embryonic stem cell

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