Variant report

Variant	rs73159025
Chromosome Location	chr3:155512824-155512825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155512413..155514015-chr3:155523541..155525192,2	K562	blood:

Variant related genes	Relation type
ENSG00000174928	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs17349490	0.84[AMR][1000 genomes]
rs17349560	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17415195	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17415343	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56213840	1.00[ASN][1000 genomes]
rs57149264	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58227176	1.00[ASN][1000 genomes]
rs6765861	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767282	1.00[ASN][1000 genomes]
rs6782387	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805895	1.00[ASN][1000 genomes]
rs73156584	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73156593	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156598	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156600	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156602	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159032	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159054	1.00[ASN][1000 genomes]
rs73159063	1.00[ASN][1000 genomes]
rs73159074	1.00[ASN][1000 genomes]
rs73159092	1.00[ASN][1000 genomes]
rs73873405	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7615287	1.00[ASN][1000 genomes]
rs7615938	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7617878	1.00[ASN][1000 genomes]
rs7621415	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7641701	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7648978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9757945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882341	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1009635	chr3:155475438-155515484	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1007915	chr3:155476547-155513397	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1006439	chr3:155481097-155515484	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1014031	chr3:155481097-155524777	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv999641	chr3:155481097-155534616	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv1001756	chr3:155487190-155515484	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155487600-155524200	Weak transcription	Fetal Heart	heart
2	chr3:155488200-155523200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:155489000-155523200	Weak transcription	Thymus	Thymus
4	chr3:155491600-155523200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:155494400-155523600	Weak transcription	Small Intestine	intestine
6	chr3:155500400-155523200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:155500600-155513600	Weak transcription	Brain Substantia Nigra	brain
8	chr3:155500800-155522600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr3:155506600-155523000	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:155506800-155523200	Weak transcription	Fetal Kidney	kidney
11	chr3:155507400-155522800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr3:155508800-155522800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:155508800-155523200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:155509000-155523400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:155509000-155523400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr3:155509200-155523200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr3:155509200-155523200	Weak transcription	Brain Germinal Matrix	brain
18	chr3:155509400-155519000	Weak transcription	K562	blood
19	chr3:155509400-155522600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr3:155509400-155523000	Weak transcription	A549	lung
21	chr3:155509400-155523200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr3:155509600-155514200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:155509600-155523200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr3:155509600-155523200	Weak transcription	Esophagus	oesophagus
25	chr3:155509600-155523400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:155509800-155514400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr3:155509800-155515000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr3:155509800-155522400	Weak transcription	Dnd41	blood
29	chr3:155509800-155522800	Weak transcription	Spleen	Spleen
30	chr3:155509800-155523000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr3:155509800-155523000	Weak transcription	Pancreas	Pancrea
32	chr3:155509800-155523200	Weak transcription	Aorta	Aorta
33	chr3:155509800-155523200	Weak transcription	Right Ventricle	heart
34	chr3:155509800-155523400	Weak transcription	Fetal Lung	lung
35	chr3:155510000-155514400	Weak transcription	Liver	Liver
36	chr3:155510000-155514600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:155510000-155514800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr3:155510000-155517000	Weak transcription	Ovary	ovary
39	chr3:155510000-155518000	Weak transcription	HepG2	liver
40	chr3:155510000-155522000	Weak transcription	Duodenum Mucosa	Duodenum
41	chr3:155510000-155522800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr3:155510000-155523000	Weak transcription	Adipose Nuclei	Adipose
43	chr3:155510000-155523000	Weak transcription	Brain Anterior Caudate	brain
44	chr3:155510000-155523000	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr3:155510000-155523000	Weak transcription	Lung	lung
46	chr3:155510000-155523000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr3:155510000-155523000	Weak transcription	Stomach Smooth Muscle	stomach
48	chr3:155510000-155523200	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr3:155510000-155523200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr3:155510000-155523200	Weak transcription	Gastric	stomach

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