Variant report

Variant	rs7317089
Chromosome Location	chr13:51580520-51580521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11617400	0.86[CEU][hapmap]
rs11618422	0.85[CEU][hapmap]
rs17075139	0.84[CHB][hapmap];0.81[CHD][hapmap];0.84[ASN][1000 genomes]
rs2281993	0.84[CHB][hapmap];0.87[CHD][hapmap];0.87[ASN][1000 genomes]
rs2296914	0.84[CHB][hapmap];0.96[CHD][hapmap];0.87[ASN][1000 genomes]
rs3790020	0.85[CEU][hapmap]
rs3790021	0.86[CEU][hapmap]
rs58094875	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60194361	0.87[ASN][1000 genomes]
rs7332491	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs7333942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7339210	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74080382	0.87[ASN][1000 genomes]
rs74080386	0.87[ASN][1000 genomes]
rs74080387	0.87[ASN][1000 genomes]
rs74080393	0.87[ASN][1000 genomes]
rs74080395	0.86[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51577800-51581000	Enhancers	Fetal Muscle Leg	muscle
2	chr13:51578200-51581800	Enhancers	Fetal Intestine Large	intestine
3	chr13:51578800-51581800	Enhancers	Fetal Intestine Small	intestine
4	chr13:51579200-51581200	Enhancers	HSMMtube	muscle
5	chr13:51579400-51581600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr13:51579400-51583800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr13:51579600-51580600	Weak transcription	Fetal Stomach	stomach
8	chr13:51579600-51581000	Enhancers	Duodenum Mucosa	Duodenum
9	chr13:51579600-51581400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr13:51579800-51581200	Enhancers	Aorta	Aorta
11	chr13:51580200-51580600	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr13:51580200-51580800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr13:51580400-51580600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr13:51580400-51580600	Flanking Active TSS	HepG2	liver
15	chr13:51580400-51581200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr13:51580400-51581400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr13:51580400-51581400	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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