Variant report

Variant	rs11617400
Chromosome Location	chr13:51577575-51577576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51567157..51569234-chr13:51575809..51577894,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11618422	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2281992	0.94[MEX][hapmap]
rs3790020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790021	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790024	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3790025	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3790026	0.96[ASN][1000 genomes]
rs60409440	0.89[ASN][1000 genomes]
rs7317089	0.86[CEU][hapmap]
rs7332491	0.81[CEU][hapmap]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51568000-51579800	Weak transcription	Pancreas	Pancrea
2	chr13:51575400-51578200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:51575400-51578400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr13:51575400-51579000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr13:51575400-51579000	Weak transcription	Right Atrium	heart
6	chr13:51575400-51579200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr13:51575400-51580200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr13:51575600-51578400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr13:51575600-51578400	Weak transcription	Esophagus	oesophagus
10	chr13:51575600-51578800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr13:51575600-51579000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr13:51575600-51579200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr13:51575600-51579200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr13:51575600-51579800	Weak transcription	Aorta	Aorta
15	chr13:51576000-51577800	Weak transcription	Fetal Muscle Leg	muscle
16	chr13:51576000-51579400	Weak transcription	Fetal Thymus	thymus
17	chr13:51576200-51577800	Weak transcription	Brain Germinal Matrix	brain
18	chr13:51576600-51578400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr13:51576600-51578400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr13:51577000-51578200	Weak transcription	Fetal Intestine Large	intestine
21	chr13:51577000-51578800	Weak transcription	Fetal Intestine Small	intestine

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