Variant report

Variant	rs3790024
Chromosome Location	chr13:51575412-51575413
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51566822..51568974-chr13:51574662..51576600,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11617400	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11618422	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075152	0.86[CEU][hapmap]
rs3790020	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3790021	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3790025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790026	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60409440	0.89[ASN][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51568000-51579800	Weak transcription	Pancreas	Pancrea
2	chr13:51573600-51575600	Enhancers	HMEC	breast
3	chr13:51573800-51575600	Bivalent Enhancer	Fetal Stomach	stomach
4	chr13:51573800-51575600	Enhancers	NHEK	skin
5	chr13:51573800-51576000	Enhancers	Fetal Muscle Leg	muscle
6	chr13:51573800-51577400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr13:51574000-51575600	Enhancers	NHDF-Ad	bronchial
8	chr13:51574000-51576600	Enhancers	Fetal Brain Male	brain
9	chr13:51574000-51577000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr13:51574200-51575600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr13:51574200-51575600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr13:51574200-51576000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr13:51574400-51575600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr13:51574400-51575600	Enhancers	Spleen	Spleen
15	chr13:51574600-51575600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr13:51574600-51575600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr13:51574600-51575600	Enhancers	Liver	Liver
18	chr13:51574600-51575600	Enhancers	Esophagus	oesophagus
19	chr13:51574800-51575600	Enhancers	H9 Cell Line	embryonic stem cell
20	chr13:51574800-51575600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr13:51575000-51575600	Flanking Active TSS	Brain Germinal Matrix	brain
22	chr13:51575200-51575800	Enhancers	Fetal Brain Female	brain
23	chr13:51575200-51576000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr13:51575200-51576000	Enhancers	Fetal Thymus	thymus
25	chr13:51575200-51576600	Weak transcription	Fetal Intestine Large	intestine
26	chr13:51575200-51576600	Weak transcription	Fetal Intestine Small	intestine
27	chr13:51575400-51575600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr13:51575400-51575600	ZNF genes & repeats	Aorta	Aorta
29	chr13:51575400-51575600	Enhancers	Brain Angular Gyrus	brain
30	chr13:51575400-51575800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr13:51575400-51578200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr13:51575400-51578400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr13:51575400-51579000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr13:51575400-51579000	Weak transcription	Right Atrium	heart
35	chr13:51575400-51579200	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr13:51575400-51580200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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