Variant report

Variant	rs3790025
Chromosome Location	chr13:51575041-51575042
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51562140..51564294-chr13:51572374..51575232,3	MCF-7	breast:
2	chr13:51566822..51568974-chr13:51574662..51576600,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11617400	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11618422	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17075152	0.86[CEU][hapmap]
rs3790020	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3790021	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3790024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790026	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60409440	0.89[ASN][1000 genomes]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51563400-51575200	Enhancers	Fetal Intestine Small	intestine
2	chr13:51565000-51575200	Weak transcription	Right Atrium	heart
3	chr13:51568000-51579800	Weak transcription	Pancreas	Pancrea
4	chr13:51569200-51575200	Weak transcription	Fetal Brain Female	brain
5	chr13:51571600-51575200	Weak transcription	Fetal Thymus	thymus
6	chr13:51572400-51575400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr13:51572800-51575200	Enhancers	Fetal Intestine Large	intestine
8	chr13:51573600-51575600	Enhancers	HMEC	breast
9	chr13:51573800-51575400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr13:51573800-51575600	Bivalent Enhancer	Fetal Stomach	stomach
11	chr13:51573800-51575600	Enhancers	NHEK	skin
12	chr13:51573800-51576000	Enhancers	Fetal Muscle Leg	muscle
13	chr13:51573800-51577400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr13:51574000-51575200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr13:51574000-51575200	Enhancers	Fetal Kidney	kidney
16	chr13:51574000-51575200	Enhancers	Fetal Muscle Trunk	muscle
17	chr13:51574000-51575400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr13:51574000-51575400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr13:51574000-51575400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr13:51574000-51575400	Enhancers	Fetal Lung	lung
21	chr13:51574000-51575400	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr13:51574000-51575400	Enhancers	HSMM	muscle
23	chr13:51574000-51575600	Enhancers	NHDF-Ad	bronchial
24	chr13:51574000-51576600	Enhancers	Fetal Brain Male	brain
25	chr13:51574000-51577000	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr13:51574200-51575400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr13:51574200-51575400	Weak transcription	Aorta	Aorta
28	chr13:51574200-51575400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr13:51574200-51575600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr13:51574200-51575600	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr13:51574200-51576000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr13:51574400-51575400	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr13:51574400-51575400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr13:51574400-51575400	Enhancers	Adipose Nuclei	Adipose
35	chr13:51574400-51575600	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr13:51574400-51575600	Enhancers	Spleen	Spleen
37	chr13:51574600-51575200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr13:51574600-51575200	Enhancers	Psoas Muscle	Psoas
39	chr13:51574600-51575400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
40	chr13:51574600-51575400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr13:51574600-51575400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr13:51574600-51575400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr13:51574600-51575400	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr13:51574600-51575600	Enhancers	H1 Cell Line	embryonic stem cell
45	chr13:51574600-51575600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr13:51574600-51575600	Enhancers	Liver	Liver
47	chr13:51574600-51575600	Enhancers	Esophagus	oesophagus
48	chr13:51574800-51575400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr13:51574800-51575400	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr13:51574800-51575400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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