Variant report

Variant	rs3790021
Chromosome Location	chr13:51576884-51576885
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51571465..51573416-chr13:51575852..51577394,2	K562	blood:
2	chr13:51567157..51569234-chr13:51575809..51577894,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11617400	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11618422	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2281992	0.94[MEX][hapmap]
rs3790020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3790024	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3790025	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3790026	0.96[ASN][1000 genomes]
rs60409440	0.89[ASN][1000 genomes]
rs7317089	0.86[CEU][hapmap]
rs7332491	0.81[CEU][hapmap]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51568000-51579800	Weak transcription	Pancreas	Pancrea
2	chr13:51573800-51577400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr13:51574000-51577000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr13:51575400-51578200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:51575400-51578400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr13:51575400-51579000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr13:51575400-51579000	Weak transcription	Right Atrium	heart
8	chr13:51575400-51579200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr13:51575400-51580200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr13:51575600-51578400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr13:51575600-51578400	Weak transcription	Esophagus	oesophagus
12	chr13:51575600-51578800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr13:51575600-51579000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr13:51575600-51579200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr13:51575600-51579200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr13:51575600-51579800	Weak transcription	Aorta	Aorta
17	chr13:51575800-51577000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr13:51576000-51577800	Weak transcription	Fetal Muscle Leg	muscle
19	chr13:51576000-51579400	Weak transcription	Fetal Thymus	thymus
20	chr13:51576200-51577800	Weak transcription	Brain Germinal Matrix	brain
21	chr13:51576600-51577000	Enhancers	Fetal Intestine Large	intestine
22	chr13:51576600-51577000	Enhancers	Fetal Intestine Small	intestine
23	chr13:51576600-51577400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr13:51576600-51578400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr13:51576600-51578400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr13:51576800-51577000	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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