Variant report

Variant	rs73212853
Chromosome Location	chr4:10096230-10096231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:29)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:29 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:10095539-10096885	GM12878	blood:	n/a	n/a
2	POLR2A	chr4:10094289-10096925	GM12891	blood:	n/a	n/a
3	POLR2A	chr4:10095629-10096884	HepG2	liver:	n/a	n/a
4	POLR2A	chr4:10094367-10104973	GM12892	blood:	n/a	n/a
5	POLR2A	chr4:10096048-10096447	GM12891	blood:	n/a	n/a
6	POLR2A	chr4:10094940-10096996	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr4:10070923-10105204	HepG2	liver:	n/a	n/a
8	POLR2A	chr4:10094452-10096856	GM12878	blood:	n/a	n/a
9	POLR2A	chr4:10096196-10096414	K562	blood:	n/a	n/a
10	POLR2A	chr4:10074947-10105172	GM12892	blood:	n/a	n/a
11	POLR2A	chr4:10075125-10121566	GM12878	blood:	n/a	n/a
12	POLR2A	chr4:10094369-10104354	K562	blood:	n/a	n/a
13	POLR2A	chr4:10092960-10105583	U87	brain:	n/a	n/a
14	POLR2A	chr4:10090795-10100762	GM12878	blood:	n/a	n/a
15	POLR2A	chr4:10094448-10096790	GM19193	blood:	n/a	n/a
16	POLR2A	chr4:10095544-10096877	GM12878	blood:	n/a	n/a
17	POLR2A	chr4:10091065-10118105	U87	brain:	n/a	n/a
18	POLR2A	chr4:10095510-10096702	H1-hESC	embryonic stem cell:	n/a	n/a
19	POLR2A	chr4:10095573-10096770	A549	lung:	n/a	n/a
20	POLR2A	chr4:10094604-10096743	K562	blood:	n/a	n/a
21	POLR2A	chr4:10094390-10096621	GM12892	blood:	n/a	n/a
22	POLR2A	chr4:10095454-10096745	K562	blood:	n/a	n/a
23	POLR2A	chr4:10095425-10096845	GM12891	blood:	n/a	n/a
24	POLR2A	chr4:10094770-10096827	GM12891	blood:	n/a	n/a
25	POLR2A	chr4:10095080-10096633	GM12891	blood:	n/a	n/a
26	POLR2A	chr4:10096077-10096476	K562	blood:	n/a	n/a
27	POLR2A	chr4:10095619-10098235	Hela-S3	cervix:	n/a	n/a
28	POLR2A	chr4:10095531-10096910	K562	blood:	n/a	n/a
29	POLR2A	chr4:10083276-10105188	GM12892	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:10094579..10097244-chr4:10117506..10119251,2	MCF-7	breast:
2	chr4:10095456..10100275-chr4:10105163..10110395,7	MCF-7	breast:
3	chr4:10089641..10094747-chr4:10094922..10099608,4	MCF-7	breast:
4	chr4:10092915..10094624-chr4:10096149..10098338,2	MCF-7	breast:
5	chr4:10091716..10096918-chr4:10117039..10120240,5	MCF-7	breast:

No data

Variant related genes	Relation type
WDR1	TF binding region
ENSG00000223086	Chromatin interaction
ENSG00000071127	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10516201	0.85[ASN][1000 genomes]
rs12374229	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12374294	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12501597	0.84[ASN][1000 genomes]
rs12501855	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12502556	0.83[ASN][1000 genomes]
rs12504600	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12506893	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2241468	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2241472	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2241473	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2241488	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35758343	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3756215	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3756227	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3756230	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3796818	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3796825	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3796826	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3822246	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3886038	0.85[ASN][1000 genomes]
rs41268389	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4456954	0.82[ASN][1000 genomes]
rs55848383	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55973727	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56146302	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56154234	0.84[ASN][1000 genomes]
rs56393964	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56403947	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61335146	0.86[ASN][1000 genomes]
rs62286600	0.84[ASN][1000 genomes]
rs62286604	0.86[ASN][1000 genomes]
rs62288520	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62288521	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62288546	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6449289	0.84[ASN][1000 genomes]
rs6825888	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs715260	0.85[ASN][1000 genomes]
rs715979	0.85[ASN][1000 genomes]
rs73212808	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73212817	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73212828	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73212863	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73212864	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73212886	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73212889	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73212890	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73212891	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73212899	0.84[ASN][1000 genomes]
rs735527	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7662229	0.81[ASN][1000 genomes]
rs7667775	0.85[ASN][1000 genomes]
rs9732	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9926	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:41 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533218	chr4:9371016-10252290	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	74 gene(s)	inside rSNPs	diseases
2	nsv530090	chr4:9383695-10165033	Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
3	nsv1014216	chr4:9713612-10223836	Transcr. at gene 5' and 3' Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
4	nsv878681	chr4:9802853-10397327	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
5	nsv997941	chr4:9805223-10493388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
6	nsv1008649	chr4:9805223-10589802	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
7	nsv1000587	chr4:9805223-10610752	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
8	nsv537022	chr4:9805223-10610752	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
9	nsv1003454	chr4:9805223-10710990	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
10	nsv537023	chr4:9805223-10710990	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
11	nsv1004801	chr4:9814720-10674528	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
12	nsv537024	chr4:9814720-10674528	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
13	nsv931483	chr4:9814721-10716463	Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
14	nsv537026	chr4:9903566-10262258	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
15	nsv1009972	chr4:9903566-10710990	Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
16	nsv537027	chr4:9903566-10710990	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
17	esv2752052	chr4:9911872-10313111	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
18	nsv1010620	chr4:9937123-10686682	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
19	nsv530280	chr4:9947818-10940041	Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
20	nsv532706	chr4:9948018-10451450	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
21	nsv1013022	chr4:9961220-10230042	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
22	nsv537028	chr4:9961220-10230042	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
23	nsv537029	chr4:9961220-10262258	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
24	nsv878691	chr4:9966477-10418078	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
25	nsv1013487	chr4:9972011-10320963	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
26	nsv829857	chr4:9982514-10155835	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
27	nsv469621	chr4:9987670-10142287	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
28	nsv482719	chr4:9987670-10142287	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
29	nsv1008067	chr4:10004664-10262258	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
30	nsv537030	chr4:10004664-10262258	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
31	nsv869057	chr4:10013411-10875454	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
32	nsv537031	chr4:10040713-10262258	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
33	nsv997936	chr4:10040713-11009045	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
34	nsv878692	chr4:10042160-10099333	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
35	nsv428438	chr4:10058226-10273779	Flanking Active TSS Genic enhancers Strong transcription Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
36	nsv537032	chr4:10069805-10262258	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
37	nsv537033	chr4:10069805-10297561	Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
38	nsv525589	chr4:10080462-10099814	Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
39	nsv524687	chr4:10080462-10159103	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
40	nsv1003286	chr4:10082156-10230606	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
41	esv989430	chr4:10092491-10100646	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73212853	SLC2A9	cis	Artery Tibial	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:10067600-10102200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:10072400-10097000	Strong transcription	A549	lung
3	chr4:10073800-10103800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:10073800-10103800	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr4:10074000-10103800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:10074000-10105600	Strong transcription	H9 Cell Line	embryonic stem cell
7	chr4:10074200-10101200	Strong transcription	Fetal Brain Female	brain
8	chr4:10074200-10106600	Strong transcription	Dnd41	blood
9	chr4:10081600-10103600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr4:10082000-10097400	Strong transcription	K562	blood
11	chr4:10084400-10114000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:10084600-10103000	Strong transcription	Brain Germinal Matrix	brain
13	chr4:10084800-10116600	Genic enhancers	Fetal Muscle Leg	muscle
14	chr4:10085800-10103400	Enhancers	Fetal Heart	heart
15	chr4:10089600-10096600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr4:10089600-10107800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:10090200-10099200	Genic enhancers	Duodenum Mucosa	Duodenum
18	chr4:10090200-10105600	Genic enhancers	Right Ventricle	heart
19	chr4:10090400-10105000	Genic enhancers	Colonic Mucosa	Colon
20	chr4:10090400-10106800	Genic enhancers	Fetal Muscle Trunk	muscle
21	chr4:10090400-10116400	Genic enhancers	Primary T cells fromperipheralblood	blood
22	chr4:10090800-10098600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr4:10091000-10099200	Genic enhancers	Rectal Mucosa Donor 31	rectum
24	chr4:10091200-10098200	Genic enhancers	Lung	lung
25	chr4:10091200-10100600	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr4:10091200-10105800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
27	chr4:10091800-10099400	Genic enhancers	Rectal Mucosa Donor 29	rectum
28	chr4:10091800-10116800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr4:10092000-10098200	Weak transcription	Fetal Kidney	kidney
30	chr4:10092200-10106400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr4:10092400-10100600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr4:10092400-10107400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr4:10092600-10099200	Genic enhancers	Placenta	Placenta
34	chr4:10092600-10099400	Enhancers	Right Atrium	heart
35	chr4:10093000-10096400	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr4:10093000-10116800	Genic enhancers	Fetal Thymus	thymus
37	chr4:10093200-10097600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr4:10093200-10099000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr4:10093200-10099200	Genic enhancers	Spleen	Spleen
40	chr4:10093400-10099400	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
41	chr4:10093400-10103800	Genic enhancers	HUVEC	blood vessel
42	chr4:10093600-10098200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr4:10093600-10099200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr4:10093600-10100000	Genic enhancers	Duodenum Smooth Muscle	Duodenum
45	chr4:10093600-10100400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr4:10093600-10101800	Genic enhancers	Brain Hippocampus Middle	brain
47	chr4:10093600-10102000	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr4:10093600-10104600	Genic enhancers	Brain Inferior Temporal Lobe	brain
49	chr4:10093800-10097400	Genic enhancers	Osteobl	bone
50	chr4:10093800-10097600	Genic enhancers	NH-A	brain

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