Variant report

Variant	rs10516201
Chromosome Location	chr4:10123941-10123942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:10122860..10124582-chr4:10454402..10456296,2	K562	blood:
2	chr4:10121162..10125014-chr4:10131852..10134322,3	MCF-7	breast:
3	chr4:10120437..10124442-chr4:10402726..10405362,4	K562	blood:
4	chr4:10122680..10125562-chr4:10662021..10664504,2	K562	blood:
5	chr4:10122708..10125358-chr4:10375421..10377082,2	K562	blood:
6	chr4:10028896..10030894-chr4:10122706..10125313,2	K562	blood:
7	chr4:10117460..10124392-chr4:10456675..10465032,17	K562	blood:
8	chr4:10122589..10124935-chr4:10442923..10445169,2	K562	blood:
9	chr4:10123474..10124373-chr6:36856788..36857395,2	MCF-7	breast:
10	chr4:10109894..10126876-chr4:10164648..10190106,79	K562	blood:
11	chr4:10123771..10125496-chr4:10158100..10160475,2	K562	blood:
12	chr4:10117300..10124855-chr4:10138380..10145377,13	MCF-7	breast:
13	chr4:10120679..10126916-chr4:10412453..10417013,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000250613	Chromatin interaction
ENSG00000178163	Chromatin interaction
ENSG00000250393	Chromatin interaction
ENSG00000251296	Chromatin interaction

Extended variants
information (count: 186 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:145)

rs_ID	r²[population]
rs10012288	0.90[CHB][hapmap]
rs10015403	0.86[CHB][hapmap]
rs10015494	0.91[CHB][hapmap]
rs10015872	0.92[CHB][hapmap]
rs10028503	0.92[CHB][hapmap]
rs10028937	0.92[CHB][hapmap]
rs10031453	0.92[CHB][hapmap]
rs1009144	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs10489079	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10489080	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs1076017	0.89[ASN][1000 genomes]
rs10805356	0.92[CHB][hapmap]
rs10939663	0.87[MKK][hapmap]
rs10939722	0.92[CHB][hapmap]
rs10939730	0.92[CHB][hapmap]
rs10939732	0.92[CHB][hapmap]
rs11732828	0.92[CHB][hapmap]
rs12374229	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12374294	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12498152	0.86[AMR][1000 genomes]
rs12498256	0.86[AMR][1000 genomes]
rs12499772	1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs12499782	0.86[AMR][1000 genomes]
rs12500891	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.80[AMR][1000 genomes]
rs12501336	0.91[AMR][1000 genomes]
rs12501597	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12501855	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12502556	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12504600	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12506893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12507586	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs12507725	0.91[AMR][1000 genomes]
rs12508413	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs12508854	0.80[AMR][1000 genomes]
rs12513165	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12513376	0.86[AMR][1000 genomes]
rs17198113	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17385294	0.93[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs17385872	0.89[MEX][hapmap]
rs17410735	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs17450260	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17450372	0.81[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17450434	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs1860903	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap]
rs2192094	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2241467	0.86[AMR][1000 genomes]
rs2241468	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2241472	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2241473	0.81[AMR][1000 genomes]
rs2241488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35758343	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3756215	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3756227	0.84[ASW][hapmap];0.83[AMR][1000 genomes]
rs3756230	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs3796818	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3796825	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3796826	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3822246	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3886038	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41268389	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4168	0.92[CHB][hapmap]
rs4401449	0.92[CHB][hapmap]
rs4456954	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4484300	0.92[CHB][hapmap]
rs4574408	0.92[CHB][hapmap]
rs4619888	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4697711	0.92[CHB][hapmap]
rs4697713	0.92[CHB][hapmap]
rs4697715	0.92[CHB][hapmap]
rs4697927	0.92[CHB][hapmap]
rs4697931	0.92[CHB][hapmap]
rs4697934	0.92[CHB][hapmap]
rs4697936	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4697937	0.92[CHB][hapmap]
rs4697940	0.92[CHB][hapmap]
rs55683032	0.86[AMR][1000 genomes]
rs55692720	0.89[AMR][1000 genomes]
rs55760253	0.83[AMR][1000 genomes]
rs55848383	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55973727	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56146302	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56154234	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs56393964	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56403947	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61335146	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs62285983	0.80[AMR][1000 genomes]
rs62285987	0.80[AMR][1000 genomes]
rs62286600	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62286604	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62287521	0.91[AMR][1000 genomes]
rs62287522	0.91[AMR][1000 genomes]
rs62287523	0.83[AMR][1000 genomes]
rs62287538	0.86[AMR][1000 genomes]
rs62287552	0.87[AMR][1000 genomes]
rs62288520	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62288521	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62288546	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62288889	0.82[AMR][1000 genomes]
rs62288891	0.80[AMR][1000 genomes]
rs6449289	1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6449300	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs6813334	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs6825888	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827496	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs6834574	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6838644	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6840883	0.92[CHB][hapmap]
rs6846402	0.92[CHB][hapmap]
rs6847379	0.90[CHB][hapmap]
rs6850146	0.82[AMR][1000 genomes]
rs6850516	0.91[CHB][hapmap]
rs6855657	0.90[CHB][hapmap]
rs715260	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs715979	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs731069	0.92[CHB][hapmap]
rs731070	0.82[CHB][hapmap]
rs73212817	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73212828	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73212853	0.85[ASN][1000 genomes]
rs73212863	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73212864	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73212886	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73212889	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73212890	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73212891	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73212899	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73216820	0.86[AMR][1000 genomes]
rs73218753	0.83[AMR][1000 genomes]
rs73218771	0.84[AMR][1000 genomes]
rs73220606	0.80[AMR][1000 genomes]
rs735527	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs747356	0.92[CHB][hapmap]
rs747357	0.92[CHB][hapmap]
rs7659717	0.87[CEU][hapmap]
rs7662229	0.93[ASN][1000 genomes]
rs7667775	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7681250	0.90[ASN][1000 genomes]
rs7683755	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs881641	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs881642	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs887729	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs887735	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs929577	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap]
rs9732	0.83[ASN][1000 genomes]
rs9926	0.84[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:41 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533218	chr4:9371016-10252290	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	74 gene(s)	inside rSNPs	diseases
2	nsv530090	chr4:9383695-10165033	Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
3	nsv1014216	chr4:9713612-10223836	Transcr. at gene 5' and 3' Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
4	nsv878681	chr4:9802853-10397327	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
5	nsv997941	chr4:9805223-10493388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
6	nsv1008649	chr4:9805223-10589802	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
7	nsv1000587	chr4:9805223-10610752	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
8	nsv537022	chr4:9805223-10610752	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
9	nsv1003454	chr4:9805223-10710990	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
10	nsv537023	chr4:9805223-10710990	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
11	nsv1004801	chr4:9814720-10674528	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
12	nsv537024	chr4:9814720-10674528	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
13	nsv931483	chr4:9814721-10716463	Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
14	nsv537026	chr4:9903566-10262258	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
15	nsv1009972	chr4:9903566-10710990	Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
16	nsv537027	chr4:9903566-10710990	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
17	esv2752052	chr4:9911872-10313111	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
18	nsv1010620	chr4:9937123-10686682	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
19	nsv530280	chr4:9947818-10940041	Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
20	nsv532706	chr4:9948018-10451450	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
21	nsv1013022	chr4:9961220-10230042	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
22	nsv537028	chr4:9961220-10230042	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
23	nsv537029	chr4:9961220-10262258	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
24	nsv878691	chr4:9966477-10418078	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
25	nsv1013487	chr4:9972011-10320963	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
26	nsv829857	chr4:9982514-10155835	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
27	nsv469621	chr4:9987670-10142287	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
28	nsv482719	chr4:9987670-10142287	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
29	nsv1008067	chr4:10004664-10262258	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
30	nsv537030	chr4:10004664-10262258	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
31	nsv869057	chr4:10013411-10875454	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
32	nsv537031	chr4:10040713-10262258	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
33	nsv997936	chr4:10040713-11009045	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
34	nsv428438	chr4:10058226-10273779	Flanking Active TSS Genic enhancers Strong transcription Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
35	nsv537032	chr4:10069805-10262258	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
36	nsv537033	chr4:10069805-10297561	Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
37	nsv524687	chr4:10080462-10159103	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
38	nsv1003286	chr4:10082156-10230606	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
39	esv16807	chr4:10099819-10234566	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
40	nsv537034	chr4:10103058-10262258	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
41	nsv537035	chr4:10103058-10297561	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10516201	SLC2A9	cis	Artery Tibial	GTEx
rs10516201	WDR1	Cis_1M	lymphoblastoid	RTeQTL
rs10516201	TADA2B	cis	cerebellum	SCAN

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:10119400-10124000	Enhancers	Fetal Muscle Leg	muscle
2	chr4:10119400-10124600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:10119400-10124600	Weak transcription	Pancreas	Pancrea
4	chr4:10119400-10126200	Enhancers	Fetal Intestine Large	intestine
5	chr4:10119600-10124200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:10119600-10124600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:10119600-10124600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr4:10119600-10124600	Weak transcription	HSMM	muscle
9	chr4:10119600-10124800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr4:10119600-10125400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr4:10119600-10126000	Enhancers	Fetal Stomach	stomach
12	chr4:10119600-10126400	Enhancers	Fetal Intestine Small	intestine
13	chr4:10119800-10124800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:10119800-10124800	Weak transcription	Right Atrium	heart
15	chr4:10119800-10125000	Weak transcription	Hela-S3	cervix
16	chr4:10120000-10124200	Weak transcription	HUVEC	blood vessel
17	chr4:10120000-10124800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr4:10120000-10124800	Weak transcription	Brain Anterior Caudate	brain
19	chr4:10120000-10124800	Weak transcription	Esophagus	oesophagus
20	chr4:10120000-10125000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:10120000-10127200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:10120200-10124400	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr4:10120200-10124800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr4:10120200-10124800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr4:10120200-10124800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr4:10120200-10124800	Weak transcription	Adipose Nuclei	Adipose
27	chr4:10120200-10124800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr4:10120200-10125000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr4:10120200-10125000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr4:10120200-10125200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr4:10120200-10126800	Enhancers	Fetal Thymus	thymus
32	chr4:10120400-10124200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr4:10120400-10124600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr4:10120400-10125000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr4:10120400-10125000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr4:10120400-10125200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr4:10120400-10125200	Weak transcription	Brain Hippocampus Middle	brain
38	chr4:10120400-10125200	Weak transcription	Small Intestine	intestine
39	chr4:10120400-10125400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr4:10120400-10126200	Enhancers	Duodenum Mucosa	Duodenum
41	chr4:10120600-10124200	Weak transcription	Lung	lung
42	chr4:10120600-10124800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr4:10120600-10125200	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr4:10120600-10125400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr4:10120600-10127400	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr4:10120800-10124800	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr4:10120800-10125000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr4:10120800-10125000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr4:10120800-10125200	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr4:10120800-10125600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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