Variant report

Variant	rs73221358
Chromosome Location	chr12:120869358-120869359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:120868317..120870781-chr12:120884024..120885670,2	MCF-7	breast:
2	chr12:120788976..120790808-chr12:120869062..120871272,2	K562	blood:
3	chr12:120868273..120869933-chr12:120875367..120877948,2	K562	blood:
4	chr12:120728593..120731429-chr12:120866852..120869829,2	K562	blood:
5	chr12:120861900..120864881-chr12:120867409..120869644,2	K562	blood:
6	chr12:120728684..120731429-chr12:120868329..120870359,2	K562	blood:

Variant related genes	Relation type
ENSG00000111780	Chromatin interaction
ENSG00000200795	Chromatin interaction
ENSG00000111775	Chromatin interaction
ENSG00000170855	Chromatin interaction
ENSG00000202538	Chromatin interaction
ENSG00000257218	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11548264	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12315013	0.86[EUR][1000 genomes]
rs14017	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16950287	1.00[ASN][1000 genomes]
rs17431357	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17431446	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17487343	0.88[AMR][1000 genomes]
rs17487385	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17509145	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17584461	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17584503	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs73221341	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221346	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221362	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221363	1.00[ASN][1000 genomes]
rs73221368	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73221372	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221373	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221378	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221380	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73221381	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221382	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223295	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73223296	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73225205	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs73225208	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225213	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225218	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225219	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225225	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225229	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225238	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225245	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225248	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225249	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs73230303	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230305	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230306	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230308	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230313	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs73230314	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230318	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230322	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230328	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230332	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230336	1.00[ASN][1000 genomes]
rs73230339	1.00[ASN][1000 genomes]
rs73230342	1.00[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120827200-120875200	Weak transcription	Right Atrium	heart
2	chr12:120852400-120875200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:120867200-120875200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr12:120867600-120875400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:120867800-120871000	Weak transcription	K562	blood
6	chr12:120869200-120870800	Weak transcription	Hela-S3	cervix
7	chr12:120869200-120875200	Weak transcription	Primary T helper cells PMA-I stimulated	--

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