Variant report

Variant	rs73230332
Chromosome Location	chr12:121024975-121024976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11548264	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12315013	0.82[AMR][1000 genomes]
rs14017	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16950287	1.00[ASN][1000 genomes]
rs17431357	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17431446	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17487385	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17509145	1.00[ASN][1000 genomes]
rs17584461	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221341	1.00[ASN][1000 genomes]
rs73221346	1.00[ASN][1000 genomes]
rs73221358	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221362	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221363	1.00[ASN][1000 genomes]
rs73221368	1.00[ASN][1000 genomes]
rs73221372	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73221373	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73221378	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73221380	1.00[ASN][1000 genomes]
rs73221381	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73221382	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73223295	1.00[ASN][1000 genomes]
rs73223296	1.00[ASN][1000 genomes]
rs73225208	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73225213	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73225218	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225219	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73225225	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225229	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225238	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225245	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225248	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230303	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230305	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230306	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230308	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230314	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230318	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230322	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230336	1.00[ASN][1000 genomes]
rs73230337	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73230339	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230342	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv973944	chr12:121017088-121027122	Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121019600-121027200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:121022800-121026200	Weak transcription	Right Ventricle	heart
3	chr12:121022800-121026600	Weak transcription	Left Ventricle	heart
4	chr12:121022800-121026800	Weak transcription	Psoas Muscle	Psoas
5	chr12:121022800-121027000	Weak transcription	Brain Anterior Caudate	brain
6	chr12:121022800-121028800	Weak transcription	Esophagus	oesophagus
7	chr12:121023000-121026000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr12:121023000-121026200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr12:121023000-121026600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr12:121023000-121026600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr12:121023000-121027000	Weak transcription	Colonic Mucosa	Colon
12	chr12:121023000-121027400	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links