Variant report

Variant	rs73221362
Chromosome Location	chr12:120876767-120876768
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr12:120876740-120876890	HCPEpiC	choroid plexus:	n/a	n/a
2	POLR2A	chr12:120876723-120876928	HepG2	liver:	n/a	n/a
3	POLR2A	chr12:120876736-120876807	GM12878	blood:	n/a	n/a
4	PAX5	chr12:120876742-120876968	GM12878	blood:	n/a	n/a
5	MXI1	chr12:120875101-120876891	SK-N-SH	brain:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:120807836..120809663-chr12:120875850..120878030,2	MCF-7	breast:
2	chr12:120728080..120732301-chr12:120874297..120877936,6	K562	blood:
3	chr12:120875699..120878976-chr12:120901336..120905207,3	MCF-7	breast:
4	chr12:120728565..120730817-chr12:120874965..120877227,3	MCF-7	breast:
5	chr12:120638719..120641136-chr12:120874234..120877493,3	K562	blood:
6	chr12:120763843..120766324-chr12:120875587..120877145,2	MCF-7	breast:
7	chr12:120727155..120732265-chr12:120871900..120878042,6	MCF-7	breast:
8	chr12:120874999..120877444-chr12:120972685..120975166,2	K562	blood:
9	chr12:120875946..120878903-chr12:121123173..121125911,2	K562	blood:
10	chr12:120875890..120877701-chr12:120905742..120908323,3	MCF-7	breast:
11	chr12:120876566..120877211-chr12:120903967..120904688,2	K562	blood:
12	chr12:120874293..120878054-chr12:120905643..120908923,7	K562	blood:
13	chr12:120875699..120878054-chr12:120933967..120936016,2	K562	blood:

No data

Variant related genes	Relation type
COX6A1	TF binding region
ENSG00000239881	Chromatin interaction
ENSG00000111786	Chromatin interaction
ENSG00000255857	Chromatin interaction
ENSG00000089157	Chromatin interaction
ENSG00000200795	Chromatin interaction
ENSG00000022840	Chromatin interaction
ENSG00000170890	Chromatin interaction
ENSG00000088986	Chromatin interaction
ENSG00000110917	Chromatin interaction
ENSG00000202538	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11548264	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12315013	0.86[EUR][1000 genomes]
rs14017	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16950287	1.00[ASN][1000 genomes]
rs17431357	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17431446	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17487385	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17509145	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17584461	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17584503	1.00[AFR][1000 genomes]
rs73221341	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221346	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221358	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221363	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73221368	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73221372	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221373	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221378	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221380	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73221381	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221382	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223295	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73223296	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73225205	1.00[AFR][1000 genomes]
rs73225208	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225213	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225218	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225219	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225225	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225229	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225238	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225245	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225248	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225249	1.00[AFR][1000 genomes]
rs73230303	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230305	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230306	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230308	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230313	1.00[AFR][1000 genomes]
rs73230314	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230318	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230322	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230328	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230332	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73230336	1.00[ASN][1000 genomes]
rs73230339	1.00[ASN][1000 genomes]
rs73230342	1.00[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120875200-120876800	Active TSS	H1 Cell Line	embryonic stem cell
2	chr12:120875200-120876800	Active TSS	H9 Cell Line	embryonic stem cell
3	chr12:120875200-120876800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:120875200-120876800	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr12:120875200-120876800	Active TSS	Fetal Brain Female	brain
6	chr12:120875200-120876800	Active TSS	Fetal Heart	heart
7	chr12:120875200-120876800	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr12:120875200-120876800	Active TSS	Right Ventricle	heart
9	chr12:120875200-120876800	Active TSS	HMEC	breast
10	chr12:120875200-120876800	Active TSS	NHLF	lung
11	chr12:120875200-120877000	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr12:120875200-120877000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr12:120875200-120877000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr12:120875200-120877000	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr12:120875200-120877000	Active TSS	HUES64 Cell Line	embryonic stem cell
16	chr12:120875200-120877000	Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr12:120875200-120877000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr12:120875200-120877000	Active TSS	Aorta	Aorta
19	chr12:120875200-120877000	Active TSS	Psoas Muscle	Psoas
20	chr12:120875200-120877000	Active TSS	Rectal Smooth Muscle	rectum
21	chr12:120875200-120877200	Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr12:120875200-120877200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr12:120875200-120877800	Active TSS	iPS-15b Cell Line	embryonic stem cell
24	chr12:120875200-120877800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr12:120875200-120878000	Active TSS	Right Atrium	heart
26	chr12:120875400-120876800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr12:120875400-120876800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr12:120875400-120876800	Active TSS	Pancreas	Pancrea
29	chr12:120875400-120876800	Active TSS	Small Intestine	intestine
30	chr12:120875400-120877000	Active TSS	Fetal Intestine Large	intestine
31	chr12:120875400-120877000	Active TSS	Left Ventricle	heart
32	chr12:120875600-120876800	Active TSS	NHEK	skin
33	chr12:120875600-120877800	Active TSS	GM12878-XiMat	blood
34	chr12:120876000-120877000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
35	chr12:120876200-120876800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
36	chr12:120876200-120876800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr12:120876200-120876800	Flanking Active TSS	Fetal Thymus	thymus
38	chr12:120876200-120876800	Flanking Active TSS	HUVEC	blood vessel
39	chr12:120876200-120877000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr12:120876200-120877000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
41	chr12:120876200-120877000	Flanking Active TSS	Primary hematopoietic stem cells	blood
42	chr12:120876200-120877000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
43	chr12:120876200-120877000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr12:120876200-120877000	Flanking Active TSS	Adipose Nuclei	Adipose
45	chr12:120876200-120877000	Flanking Active TSS	Liver	Liver
46	chr12:120876200-120877000	Flanking Active TSS	Osteobl	bone
47	chr12:120876200-120877200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr12:120876200-120877200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
49	chr12:120876200-120877200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr12:120876200-120877400	Flanking Active TSS	Primary T cells from cord blood	blood

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