Variant report

Variant	rs73221380
Chromosome Location	chr12:120913377-120913378
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:120903414..120909393-chr12:120910653..120915482,19	MCF-7	breast:
2	chr12:120727751..120732241-chr12:120903536..120914205,12	MCF-7	breast:
3	chr12:120903651..120915747-chr12:120930491..120936868,24	K562	blood:
4	chr12:120877160..120879144-chr12:120912713..120914727,2	MCF-7	breast:
5	chr12:120911083..120913950-chr12:120960998..120963373,2	K562	blood:
6	chr12:120899786..120915162-chr12:120926090..120939394,54	MCF-7	breast:
7	chr12:120912239..120914357-chr12:120965439..120967100,2	K562	blood:
8	chr12:120911190..120915382-chr12:120965465..120968340,3	MCF-7	breast:
9	chr12:120874424..120877390-chr12:120911060..120913556,3	MCF-7	breast:
10	chr12:120910734..120913987-chr12:120933079..120935604,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000241030	Chromatin interaction
ENSG00000111780	Chromatin interaction
ENSG00000110871	Chromatin interaction
ENSG00000088986	Chromatin interaction
ENSG00000248008	Chromatin interaction
ENSG00000202538	Chromatin interaction
ENSG00000200795	Chromatin interaction
ENSG00000111775	Chromatin interaction
ENSG00000111786	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11548264	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs14017	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16950287	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17431357	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17431446	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17487343	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17487385	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17509145	1.00[ASN][1000 genomes]
rs17584461	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17584503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73221341	1.00[ASN][1000 genomes]
rs73221346	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73221358	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73221362	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73221363	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221372	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73221373	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73221378	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73221381	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73221382	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73223295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73225208	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73225213	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73225218	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73225219	1.00[ASN][1000 genomes]
rs73225225	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73225229	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73225238	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73225245	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73225248	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73225249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73230303	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73230305	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73230306	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73230308	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73230313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73230314	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73230318	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73230322	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73230328	1.00[ASN][1000 genomes]
rs73230332	1.00[ASN][1000 genomes]
rs73230336	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73230339	1.00[ASN][1000 genomes]
rs73230342	1.00[ASN][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120908200-120933200	Weak transcription	Aorta	Aorta
2	chr12:120908400-120917400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr12:120908400-120919400	Weak transcription	Right Ventricle	heart
4	chr12:120908400-120919800	Weak transcription	Fetal Intestine Large	intestine
5	chr12:120908400-120925800	Weak transcription	Fetal Intestine Small	intestine
6	chr12:120908400-120926000	Weak transcription	HSMMtube	muscle
7	chr12:120908400-120928800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr12:120908400-120929000	Weak transcription	Psoas Muscle	Psoas
9	chr12:120908400-120932400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr12:120908400-120932400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr12:120908600-120917400	Weak transcription	Fetal Muscle Leg	muscle
12	chr12:120908600-120925400	Weak transcription	Pancreas	Pancrea
13	chr12:120908600-120927200	Weak transcription	Fetal Brain Female	brain
14	chr12:120908600-120928200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr12:120908600-120928600	Weak transcription	Spleen	Spleen
16	chr12:120908600-120928800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr12:120908600-120932800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr12:120908600-120932800	Weak transcription	Adipose Nuclei	Adipose
19	chr12:120908600-120932800	Weak transcription	Brain Germinal Matrix	brain
20	chr12:120908600-120932800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr12:120908600-120933000	Weak transcription	Thymus	Thymus
22	chr12:120908800-120917400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr12:120908800-120926000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr12:120908800-120928400	Weak transcription	Primary T cells from cord blood	blood
25	chr12:120909200-120914200	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr12:120909200-120919400	Weak transcription	Fetal Stomach	stomach
27	chr12:120909200-120919600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr12:120909600-120913600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr12:120910400-120913800	Enhancers	Placenta Amnion	Placenta Amnion
30	chr12:120910600-120917400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr12:120911000-120913800	Enhancers	K562	blood
32	chr12:120911000-120917400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr12:120911000-120932800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr12:120911600-120913600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr12:120911600-120914400	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr12:120912000-120913400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr12:120912000-120913400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr12:120912000-120913400	Enhancers	A549	lung
39	chr12:120912000-120928600	Weak transcription	Esophagus	oesophagus
40	chr12:120912200-120917400	Weak transcription	Brain Angular Gyrus	brain
41	chr12:120912400-120913800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr12:120912600-120913400	Enhancers	Brain Anterior Caudate	brain
43	chr12:120912600-120916800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr12:120912600-120917400	Weak transcription	Brain Substantia Nigra	brain
45	chr12:120912600-120929200	Weak transcription	Fetal Thymus	thymus
46	chr12:120912800-120913600	Weak transcription	Fetal Kidney	kidney
47	chr12:120912800-120913800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr12:120912800-120917400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr12:120912800-120917400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr12:120912800-120917400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links