Variant report

Variant	rs73244429
Chromosome Location	chr10:37494521-37494522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1148261	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1148270	1.00[AMR][1000 genomes]
rs1200860	1.00[AMR][1000 genomes]
rs56895000	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58746992	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6482031	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758213	chr10:37285763-37625699	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759742	chr10:37285763-37625699	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv831832	chr10:37366131-37563758	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1804065	chr10:37416376-37526817	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv1850268	chr10:37416550-37507493	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1813976	chr10:37419831-37511683	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv895029	chr10:37423197-37497698	Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv1826074	chr10:37430785-37507693	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv1805908	chr10:37430985-37507493	Active TSS Enhancers Strong transcription Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv1828844	chr10:37430985-37507493	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv1850059	chr10:37430985-37507493	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv947605	chr10:37432194-37615294	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	esv1795675	chr10:37436096-37494701	Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
14	nsv825347	chr10:37437315-37495897	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
15	esv20564	chr10:37437653-37495421	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
16	esv1816955	chr10:37443038-37494701	Strong transcription Weak transcription ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
17	esv1804988	chr10:37449475-37502185	Strong transcription Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
18	esv1798358	chr10:37450455-37494701	Enhancers Strong transcription Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
19	esv1826161	chr10:37450455-37494701	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
20	esv1823281	chr10:37450455-37495243	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
21	esv1845943	chr10:37450455-37495243	Strong transcription Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
22	nsv947848	chr10:37460858-37495018	Strong transcription Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
23	nsv948257	chr10:37487630-37495018	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37491200-37507600	Weak transcription	A549	lung

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