Variant report
Variant | rs73254896 |
---|---|
Chromosome Location | chr5:116346932-116346933 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs17140960 | 1.00[EUR][1000 genomes] |
rs58275123 | 0.96[AFR][1000 genomes] |
rs73254889 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs73254900 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs73256912 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs73256914 | 1.00[EUR][1000 genomes] |
rs73256916 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs73256919 | 1.00[EUR][1000 genomes] |
rs73256921 | 1.00[EUR][1000 genomes] |
rs73268818 | 1.00[EUR][1000 genomes] |
rs7714136 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs7724055 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs7727868 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs7734149 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs7737736 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1020292 | chr5:116183712-116349633 | Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv1033379 | chr5:116244963-116464338 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv1016586 | chr5:116317968-116377074 | Weak transcription ZNF genes & repeats Enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv1028067 | chr5:116340955-116427869 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | nsv4970 | chr5:116345489-116390583 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:116346200-116349200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |