Variant report
Variant | rs73256912 |
---|---|
Chromosome Location | chr5:116361505-116361506 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr5:116360894..116363806-chr5:116375344..116377265,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs17140960 | 1.00[EUR][1000 genomes] |
rs73254889 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs73254896 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs73254900 | 1.00[EUR][1000 genomes] |
rs73256914 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs73256916 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs73256919 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs73256921 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs73268818 | 1.00[EUR][1000 genomes] |
rs7714136 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs7724055 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs7727868 | 1.00[EUR][1000 genomes] |
rs7734149 | 1.00[EUR][1000 genomes] |
rs7737736 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1033379 | chr5:116244963-116464338 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
2 | nsv1016586 | chr5:116317968-116377074 | Weak transcription ZNF genes & repeats Enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv1028067 | chr5:116340955-116427869 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv4970 | chr5:116345489-116390583 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | nsv882751 | chr5:116349590-116453954 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
6 | esv3436628 | chr5:116359078-116361626 | Enhancers Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
7 | esv3442670 | chr5:116359303-116361801 | Weak transcription Enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:116356600-116366800 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |