Variant report

Variant	rs73268818
Chromosome Location	chr5:116331014-116331015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17140960	1.00[EUR][1000 genomes]
rs60385273	0.90[AFR][1000 genomes]
rs73254889	1.00[EUR][1000 genomes]
rs73254896	1.00[EUR][1000 genomes]
rs73254900	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73256912	1.00[EUR][1000 genomes]
rs73256914	1.00[EUR][1000 genomes]
rs73256916	1.00[EUR][1000 genomes]
rs73256919	1.00[EUR][1000 genomes]
rs73256921	1.00[EUR][1000 genomes]
rs73266937	0.83[AFR][1000 genomes]
rs73266944	0.83[AFR][1000 genomes]
rs73266949	0.85[AFR][1000 genomes]
rs73266970	0.90[AFR][1000 genomes]
rs7714136	1.00[EUR][1000 genomes]
rs7724055	1.00[EUR][1000 genomes]
rs7727868	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7734149	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7737736	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020292	chr5:116183712-116349633	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1033379	chr5:116244963-116464338	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1016586	chr5:116317968-116377074	Weak transcription ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116328200-116335200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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