Variant report
| Variant | rs73256919 |
|---|---|
| Chromosome Location | chr5:116366831-116366832 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | JUND | chr5:116366691-116366971 | HepG2 | liver: | n/a | chr5:116366838-116366847 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000250949 | TF binding region |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs17140960 | 1.00[EUR][1000 genomes] |
| rs73254889 | 1.00[EUR][1000 genomes] |
| rs73254892 | 0.81[AFR][1000 genomes] |
| rs73254896 | 1.00[EUR][1000 genomes] |
| rs73254900 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73256912 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73256914 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73256916 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73256921 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73268818 | 1.00[EUR][1000 genomes] |
| rs7714136 | 1.00[EUR][1000 genomes] |
| rs7724055 | 1.00[EUR][1000 genomes] |
| rs7727868 | 1.00[EUR][1000 genomes] |
| rs7734149 | 1.00[EUR][1000 genomes] |
| rs7737736 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1033379 | chr5:116244963-116464338 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016586 | chr5:116317968-116377074 | Weak transcription ZNF genes & repeats Enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1028067 | chr5:116340955-116427869 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv4970 | chr5:116345489-116390583 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv882751 | chr5:116349590-116453954 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 6 | nsv1034289 | chr5:116364840-116408396 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:116366800-116367200 | ZNF genes & repeats | ES-I3 Cell Line | embryonic stem cell |
