Variant report
| Variant | rs73263065 |
|---|---|
| Chromosome Location | chr8:62995195-62995196 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs58123985 | 1.00[EUR][1000 genomes] |
| rs58526571 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60501165 | 1.00[AMR][1000 genomes] |
| rs61636161 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73257247 | 1.00[EUR][1000 genomes] |
| rs73259032 | 1.00[EUR][1000 genomes] |
| rs73259033 | 1.00[EUR][1000 genomes] |
| rs73261011 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73261028 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73261030 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73261047 | 1.00[EUR][1000 genomes] |
| rs73261084 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73261089 | 1.00[EUR][1000 genomes] |
| rs73261092 | 1.00[EUR][1000 genomes] |
| rs73261097 | 1.00[EUR][1000 genomes] |
| rs73263030 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73263057 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73263079 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73265002 | 1.00[EUR][1000 genomes] |
| rs73683069 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv890954 | chr8:62919691-63023132 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv890955 | chr8:62919691-63062581 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1032321 | chr8:62954064-63026567 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:62994200-62999400 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
