Variant report

Variant	rs73267132
Chromosome Location	chr5:147341771-147341772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17107543	1.00[AMR][1000 genomes]
rs17107608	1.00[AMR][1000 genomes]
rs17107620	1.00[AMR][1000 genomes]
rs73267112	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73267136	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73267139	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73267140	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73267142	1.00[AMR][1000 genomes]
rs73267145	1.00[AMR][1000 genomes]
rs73267148	1.00[AMR][1000 genomes]
rs73267149	1.00[AMR][1000 genomes]
rs73267151	1.00[AMR][1000 genomes]
rs73267168	1.00[AMR][1000 genomes]
rs73267180	1.00[AMR][1000 genomes]
rs73267184	1.00[AMR][1000 genomes]
rs73267190	1.00[AMR][1000 genomes]
rs73267192	1.00[AMR][1000 genomes]
rs73269111	1.00[AMR][1000 genomes]
rs73269137	1.00[AMR][1000 genomes]
rs73269156	1.00[AMR][1000 genomes]
rs73269187	1.00[AMR][1000 genomes]
rs7712858	1.00[AMR][1000 genomes]
rs7725960	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028477	chr5:147255013-147416217	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2760927	chr5:147327342-147343763	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147326600-147345200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:147327000-147343200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:147327200-147343400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:147328400-147343400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:147331800-147343000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr5:147335800-147343200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:147336400-147343400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr5:147336400-147343400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:147336400-147352800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr5:147336600-147343600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr5:147336600-147352600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr5:147337600-147343800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:147338000-147343000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr5:147341200-147343600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr5:147341400-147343600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr5:147341600-147343000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:147341600-147343400	Weak transcription	Stomach Mucosa	stomach
18	chr5:147341600-147343400	Weak transcription	Hela-S3	cervix

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