Variant report

Variant	rs73267168
Chromosome Location	chr5:147394331-147394332
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17107543	1.00[AMR][1000 genomes]
rs17107608	1.00[AMR][1000 genomes]
rs17107620	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73267112	1.00[AMR][1000 genomes]
rs73267132	1.00[AMR][1000 genomes]
rs73267136	1.00[AMR][1000 genomes]
rs73267139	1.00[AMR][1000 genomes]
rs73267140	1.00[AMR][1000 genomes]
rs73267142	1.00[AMR][1000 genomes]
rs73267145	1.00[AMR][1000 genomes]
rs73267148	1.00[AMR][1000 genomes]
rs73267149	1.00[AMR][1000 genomes]
rs73267151	1.00[AMR][1000 genomes]
rs73267180	1.00[AMR][1000 genomes]
rs73267184	1.00[AMR][1000 genomes]
rs73267190	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73267192	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73269111	1.00[AMR][1000 genomes]
rs73269137	1.00[AMR][1000 genomes]
rs73269156	1.00[AMR][1000 genomes]
rs73269187	1.00[AMR][1000 genomes]
rs7712858	1.00[AMR][1000 genomes]
rs7725960	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028477	chr5:147255013-147416217	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1033838	chr5:147360521-147484014	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147386400-147400000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr5:147388600-147401800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:147389200-147394400	Enhancers	Hela-S3	cervix
4	chr5:147390600-147394600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:147391000-147394400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:147391000-147394400	Enhancers	HMEC	breast
7	chr5:147391000-147394400	Enhancers	NHEK	skin
8	chr5:147391600-147400800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr5:147391800-147401600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:147392600-147396200	Weak transcription	Psoas Muscle	Psoas
11	chr5:147394000-147394600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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