Variant report
| Variant | rs73267151 |
|---|---|
| Chromosome Location | chr5:147371419-147371420 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:147369292..147371929-chr5:147395160..147396738,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs17107543 | 1.00[AMR][1000 genomes] |
| rs17107608 | 1.00[AMR][1000 genomes] |
| rs17107620 | 1.00[AMR][1000 genomes] |
| rs73267112 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73267132 | 1.00[AMR][1000 genomes] |
| rs73267136 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73267139 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73267140 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73267142 | 1.00[AMR][1000 genomes] |
| rs73267145 | 1.00[AMR][1000 genomes] |
| rs73267148 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73267149 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73267168 | 1.00[AMR][1000 genomes] |
| rs73267180 | 1.00[AMR][1000 genomes] |
| rs73267184 | 1.00[AMR][1000 genomes] |
| rs73267190 | 1.00[AMR][1000 genomes] |
| rs73267192 | 1.00[AMR][1000 genomes] |
| rs73269111 | 1.00[AMR][1000 genomes] |
| rs73269137 | 1.00[AMR][1000 genomes] |
| rs73269156 | 1.00[AMR][1000 genomes] |
| rs73269187 | 1.00[AMR][1000 genomes] |
| rs7712858 | 1.00[AMR][1000 genomes] |
| rs7725960 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1028477 | chr5:147255013-147416217 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033838 | chr5:147360521-147484014 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:147365400-147379400 | Weak transcription | Esophagus | oesophagus |
