Variant report

Variant	rs73269156
Chromosome Location	chr5:147449923-147449924
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17107543	1.00[AMR][1000 genomes]
rs17107608	1.00[AMR][1000 genomes]
rs17107620	1.00[AMR][1000 genomes]
rs73267112	1.00[AMR][1000 genomes]
rs73267132	1.00[AMR][1000 genomes]
rs73267136	1.00[AMR][1000 genomes]
rs73267139	1.00[AMR][1000 genomes]
rs73267140	1.00[AMR][1000 genomes]
rs73267142	1.00[AMR][1000 genomes]
rs73267145	1.00[AMR][1000 genomes]
rs73267148	1.00[AMR][1000 genomes]
rs73267149	1.00[AMR][1000 genomes]
rs73267151	1.00[AMR][1000 genomes]
rs73267168	1.00[AMR][1000 genomes]
rs73267180	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73267184	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73267190	1.00[AMR][1000 genomes]
rs73267192	1.00[AMR][1000 genomes]
rs73269111	1.00[AMR][1000 genomes]
rs73269137	1.00[AMR][1000 genomes]
rs73269187	1.00[AMR][1000 genomes]
rs7712858	1.00[AMR][1000 genomes]
rs7725960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033838	chr5:147360521-147484014	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv933016	chr5:147395849-147453701	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv933225	chr5:147395849-147486560	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv1834529	chr5:147442199-147456843	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147437200-147457400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:147437800-147450200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:147437800-147463800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:147440400-147452800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:147443600-147450000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:147443800-147455400	Weak transcription	Esophagus	oesophagus
7	chr5:147444200-147450400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:147447000-147450200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr5:147448200-147450000	Weak transcription	NHEK	skin
10	chr5:147449200-147450200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr5:147449600-147451000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:147449800-147453000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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