Variant report

Variant	rs73268380
Chromosome Location	chr5:147945064-147945065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs57349530	1.00[AMR][1000 genomes]
rs58789597	1.00[AMR][1000 genomes]
rs60374416	1.00[AMR][1000 genomes]
rs6860022	1.00[AMR][1000 genomes]
rs6878613	1.00[AMR][1000 genomes]
rs73262490	1.00[AMR][1000 genomes]
rs73262496	1.00[AMR][1000 genomes]
rs73262500	1.00[AMR][1000 genomes]
rs73262502	1.00[AMR][1000 genomes]
rs73264508	1.00[AMR][1000 genomes]
rs73264541	1.00[AMR][1000 genomes]
rs73264549	1.00[AMR][1000 genomes]
rs73264589	1.00[AMR][1000 genomes]
rs73264591	1.00[AMR][1000 genomes]
rs73264599	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830516	chr5:147801104-147966093	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1023832	chr5:147920935-148110926	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537917	chr5:147920935-148110926	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147943000-147967400	Weak transcription	Pancreas	Pancrea
2	chr5:147944800-147945400	Enhancers	Fetal Heart	heart
3	chr5:147944800-147945400	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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