Variant report

Variant	rs57349530
Chromosome Location	chr5:147765804-147765805
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:14)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:14 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:147762988-147766064	HepG2	liver:	n/a	n/a
2	POLR2A	chr5:147765740-147765836	Hela-S3	cervix:	n/a	n/a
3	ARID3A	chr5:147765749-147765933	HepG2	liver:	n/a	n/a
4	JUND	chr5:147765791-147765817	HepG2	liver:	n/a	n/a
5	NR2F2	chr5:147765561-147766112	MCF-7	breast:	n/a	n/a
6	POLR2A	chr5:147765711-147766074	GM12878	blood:	n/a	n/a
7	POLR2A	chr5:147763134-147766648	K562	blood:	n/a	n/a
8	POLR2A	chr5:147762108-147766732	MCF10A-Er-Src	breast:	n/a	n/a
9	POLR2A	chr5:147762182-147766645	MCF10A-Er-Src	breast:	n/a	n/a
10	POLR2A	chr5:147765595-147765957	K562	blood:	n/a	n/a
11	POLR2A	chr5:147765531-147766127	HepG2	liver:	n/a	n/a
12	GATA3	chr5:147765573-147766134	MCF-7	breast:	n/a	n/a
13	POLR2A	chr5:147765581-147765918	Hela-S3	cervix:	n/a	n/a
14	POLR2A	chr5:147762536-147765992	GM12878	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:147765249..147769728-chr5:147791100..147796136,4	K562	blood:
2	chr5:147764022..147766903-chr5:147772422..147774859,3	K562	blood:
3	chr5:147762466..147766033-chr5:147774810..147779515,8	K562	blood:
4	chr5:147762735..147765811-chr5:147775100..147779684,6	MCF-7	breast:
5	chr5:147761605..147765923-chr5:147767275..147775967,11	MCF-7	breast:
6	chr5:147765057..147766795-chr5:147784064..147786690,2	K562	blood:
7	chr5:147763737..147767286-chr5:147777906..147782200,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000247199	TF binding region
ENSG00000145868	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs57994439	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58789597	1.00[AMR][1000 genomes]
rs59743971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60374416	1.00[AMR][1000 genomes]
rs6860022	1.00[AMR][1000 genomes]
rs6878613	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6887886	1.00[AMR][1000 genomes]
rs73262428	1.00[AMR][1000 genomes]
rs73262446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262490	1.00[AMR][1000 genomes]
rs73262496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73264508	1.00[AMR][1000 genomes]
rs73264541	1.00[AMR][1000 genomes]
rs73264549	1.00[AMR][1000 genomes]
rs73264589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73264591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73264599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73266453	0.85[AFR][1000 genomes]
rs73268380	1.00[AMR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147764200-147766200	Enhancers	Spleen	Spleen
2	chr5:147764400-147766000	Enhancers	Primary B cells from peripheral blood	blood
3	chr5:147764400-147766000	Enhancers	Gastric	stomach
4	chr5:147764400-147766000	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr5:147764400-147766200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr5:147764400-147766200	Enhancers	Primary T cells fromperipheralblood	blood
7	chr5:147764400-147766200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr5:147764400-147766200	Enhancers	Pancreas	Pancrea
9	chr5:147764400-147766800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr5:147764400-147767400	Weak transcription	Placenta	Placenta
11	chr5:147764400-147768000	Weak transcription	Aorta	Aorta
12	chr5:147764400-147773000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr5:147764400-147777200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr5:147764400-147789800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr5:147764400-147795400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:147764400-147796600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr5:147764400-147806800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr5:147764600-147766000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:147764600-147766000	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr5:147764600-147766000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr5:147764600-147766000	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr5:147764600-147766000	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr5:147764600-147766000	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr5:147764600-147766000	Enhancers	Stomach Mucosa	stomach
25	chr5:147764600-147766000	Enhancers	Thymus	Thymus
26	chr5:147764600-147766000	Flanking Active TSS	GM12878-XiMat	blood
27	chr5:147764600-147766200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr5:147764600-147766200	Enhancers	HSMMtube	muscle
29	chr5:147764600-147766400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr5:147764600-147766400	Enhancers	Liver	Liver
31	chr5:147764600-147766600	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr5:147764600-147766800	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr5:147764600-147767000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr5:147764600-147768000	Enhancers	HUVEC	blood vessel
35	chr5:147764600-147768600	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr5:147764600-147770600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr5:147764600-147772200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr5:147764600-147772400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr5:147764600-147773800	Weak transcription	HSMM	muscle
40	chr5:147764600-147774400	Weak transcription	HMEC	breast
41	chr5:147764800-147766000	Enhancers	Primary hematopoietic stem cells	blood
42	chr5:147764800-147766000	Enhancers	Brain Germinal Matrix	brain
43	chr5:147764800-147766000	Enhancers	Psoas Muscle	Psoas
44	chr5:147764800-147766200	Enhancers	Adipose Nuclei	Adipose
45	chr5:147764800-147767000	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr5:147764800-147768200	Enhancers	NH-A	brain
47	chr5:147764800-147768800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr5:147764800-147771800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr5:147764800-147772600	Weak transcription	Fetal Brain Female	brain
50	chr5:147764800-147777400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links