Variant report

Variant	rs59743971
Chromosome Location	chr5:147726986-147726987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs57349530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57994439	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58789597	1.00[AMR][1000 genomes]
rs60374416	1.00[AMR][1000 genomes]
rs6860022	1.00[AMR][1000 genomes]
rs6878613	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6887886	1.00[AMR][1000 genomes]
rs73262428	1.00[AMR][1000 genomes]
rs73262446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262490	1.00[AMR][1000 genomes]
rs73262496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73264508	1.00[AMR][1000 genomes]
rs73264541	1.00[AMR][1000 genomes]
rs73264549	1.00[AMR][1000 genomes]
rs73264589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73264591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73264599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73266453	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147709400-147749200	Weak transcription	Psoas Muscle	Psoas
2	chr5:147713000-147728800	Weak transcription	Aorta	Aorta
3	chr5:147714800-147731200	Weak transcription	Pancreas	Pancrea
4	chr5:147721600-147729000	Weak transcription	Left Ventricle	heart
5	chr5:147723600-147751600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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