Variant report

Variant	rs6878613
Chromosome Location	chr5:147786169-147786170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:147786163-147786363	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:147785040..147786997-chr5:147796101..147798521,2	MCF-7	breast:
2	chr5:147784800..147787075-chr5:147804739..147807528,2	MCF-7	breast:

Variant related genes	Relation type
FBXO38	TF binding region
ENSG00000145868	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs57349530	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57994439	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58789597	1.00[AMR][1000 genomes]
rs59743971	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60374416	1.00[AMR][1000 genomes]
rs6860022	1.00[AMR][1000 genomes]
rs6887886	1.00[AMR][1000 genomes]
rs73262428	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262446	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262474	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262478	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262490	1.00[AMR][1000 genomes]
rs73262496	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262500	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262502	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73264508	1.00[AMR][1000 genomes]
rs73264541	1.00[AMR][1000 genomes]
rs73264549	1.00[AMR][1000 genomes]
rs73264589	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73264591	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73264599	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73266453	0.93[AFR][1000 genomes]
rs73268380	1.00[AMR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147764400-147789800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:147764400-147795400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:147764400-147796600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:147764400-147806800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:147765200-147796200	Weak transcription	Esophagus	oesophagus
6	chr5:147765800-147789600	Weak transcription	Lung	lung
7	chr5:147766200-147789600	Weak transcription	Spleen	Spleen
8	chr5:147768200-147805200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr5:147768400-147789800	Weak transcription	Aorta	Aorta
10	chr5:147772600-147789600	Weak transcription	Gastric	stomach
11	chr5:147772600-147808000	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr5:147772600-147808800	Strong transcription	Dnd41	blood
13	chr5:147772800-147788400	Weak transcription	Psoas Muscle	Psoas
14	chr5:147772800-147809400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:147773400-147789800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr5:147773600-147808800	Strong transcription	Fetal Thymus	thymus
17	chr5:147773800-147796200	Strong transcription	HSMM	muscle
18	chr5:147774000-147809400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr5:147774200-147800400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:147774200-147809000	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr5:147774400-147807800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr5:147775400-147801600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr5:147776400-147789800	Weak transcription	Pancreas	Pancrea
24	chr5:147777200-147808000	Strong transcription	Fetal Muscle Trunk	muscle
25	chr5:147777400-147823200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr5:147777600-147807600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr5:147777600-147809600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr5:147778000-147807600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr5:147778400-147792800	Strong transcription	K562	blood
30	chr5:147778400-147808200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr5:147778400-147809400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr5:147778400-147823400	Strong transcription	Placenta	Placenta
33	chr5:147778600-147791200	Strong transcription	HepG2	liver
34	chr5:147778600-147798600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr5:147778600-147809400	Strong transcription	Liver	Liver
36	chr5:147778800-147798400	Strong transcription	H1 Cell Line	embryonic stem cell
37	chr5:147778800-147800400	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr5:147778800-147803200	Weak transcription	Small Intestine	intestine
39	chr5:147778800-147808200	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr5:147778800-147809400	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr5:147778800-147822000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr5:147779000-147789000	Weak transcription	Right Ventricle	heart
43	chr5:147779000-147795400	Weak transcription	Fetal Intestine Small	intestine
44	chr5:147779000-147796200	Strong transcription	Duodenum Mucosa	Duodenum
45	chr5:147779000-147796600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr5:147779000-147808800	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr5:147779000-147809200	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr5:147779000-147814400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr5:147779200-147796600	Weak transcription	Stomach Mucosa	stomach
50	chr5:147779200-147808800	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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