Variant report

Variant	rs73271146
Chromosome Location	chr5:147496911-147496912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1422986	0.89[AFR][1000 genomes]
rs1422988	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41435445	1.00[AMR][1000 genomes]
rs56683639	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57180635	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60855170	1.00[AMR][1000 genomes]
rs61338246	1.00[AMR][1000 genomes]
rs6891761	1.00[AMR][1000 genomes]
rs6892070	0.85[AFR][1000 genomes]
rs73265274	1.00[AMR][1000 genomes]
rs73271122	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271138	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271140	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271166	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271167	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271170	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271171	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271175	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271180	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271184	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271186	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7710036	1.00[AMR][1000 genomes]
rs7727191	1.00[AMR][1000 genomes]
rs7730524	1.00[AMR][1000 genomes]
rs7734032	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830515	chr5:147460852-147602247	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147470400-147518400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr5:147470600-147508400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:147470600-147509000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:147471600-147514800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:147472000-147505000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:147472600-147497200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:147474200-147513400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:147479000-147500600	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr5:147480800-147498200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr5:147481400-147513200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr5:147481600-147505000	Weak transcription	Esophagus	oesophagus
12	chr5:147482200-147509000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr5:147486800-147515000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:147487400-147505000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr5:147487800-147525800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr5:147493800-147497200	Strong transcription	Hela-S3	cervix
17	chr5:147494000-147500400	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr5:147494200-147497800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr5:147495000-147500200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr5:147496200-147501600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr5:147496800-147497800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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